Wall clock time and date at job start Sun Mar 29 2020 22:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 O 1.42903 * 109.47150 * 119.99849 * 2 1 3 5 5 C 1.42899 * 113.99642 * 90.00126 * 4 2 1 6 6 C 1.53007 * 109.46715 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46672 * 180.02562 * 6 5 4 8 8 C 1.35310 * 125.86801 * 125.32835 * 7 6 5 9 9 C 1.35348 * 106.17503 * 180.10838 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.08997 * 109.47349 * 300.00273 * 1 2 3 22 22 H 1.09006 * 109.46723 * 60.00259 * 1 2 3 23 23 H 1.08992 * 109.46780 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47335 * 240.00282 * 2 1 3 25 25 H 1.09006 * 109.47578 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47397 * 300.00165 * 3 2 1 27 27 H 1.09004 * 109.47375 * 59.99989 * 3 2 1 28 28 H 1.08998 * 109.47441 * 60.00509 * 5 4 2 29 29 H 1.08992 * 109.47311 * 300.00056 * 5 4 2 30 30 H 1.08989 * 109.47010 * 59.99932 * 6 5 4 31 31 H 1.08998 * 109.47091 * 299.99607 * 6 5 4 32 32 H 1.08000 * 126.91429 * 359.96633 * 8 7 6 33 33 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 34 34 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7079 -2.6926 2.2946 7 7 2.9071 -4.1325 2.1117 8 6 4.0512 -4.8120 2.3571 9 6 3.7942 -6.1055 2.0524 10 6 4.7534 -7.2634 2.1532 11 6 4.1514 -8.3405 3.0185 12 1 3.1720 -8.2007 3.4517 13 6 4.8484 -9.5071 3.2520 14 7 6.0408 -9.6774 2.7242 15 14 4.0989 -10.8453 4.3181 16 1 2.8234 -11.3047 3.7121 17 1 5.0421 -11.9883 4.4136 18 1 3.8357 -10.3066 5.6768 19 7 2.5195 -6.1548 1.6496 20 7 2.0220 -4.9695 1.6963 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9320 -2.2467 0.1987 29 1 1.2539 -2.5433 0.7124 30 1 1.9757 -2.5241 3.0842 31 1 3.6541 -2.2275 2.5712 32 1 4.9828 -4.4040 2.7204 33 1 5.6893 -6.9225 2.5960 34 1 4.9467 -7.6628 1.1577 35 1 6.5313 -10.4980 2.8887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:53 Heat of formation + Delta-G solvation = 37.233810 kcal Electronic energy + Delta-G solvation = -16346.156846 eV Core-core repulsion = 13574.435734 eV Total energy + Delta-G solvation = -2771.721111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.54810 -38.78951 -35.06710 -33.37737 -32.72369 -31.05669 -29.34939 -27.57472 -27.31256 -24.07694 -23.31984 -21.71449 -21.12578 -19.97895 -17.47961 -16.45668 -16.41841 -16.04317 -15.58263 -14.88426 -14.54072 -14.14171 -14.05157 -13.30411 -12.93921 -12.77436 -12.58239 -12.29972 -12.07549 -11.93758 -11.64274 -11.54206 -11.05867 -10.98864 -10.70986 -10.66255 -10.11571 -9.89916 -9.70753 -9.46860 -9.30763 -8.43043 -8.14565 -5.98222 -3.98846 2.15917 2.52050 3.39628 3.41481 3.43126 3.51451 3.55994 4.43194 4.50935 4.52568 4.68797 4.73168 4.85760 5.00249 5.14022 5.24486 5.26449 5.35639 5.38874 5.45511 5.48625 5.54952 5.81209 5.84304 5.89272 6.05694 6.29082 6.82806 7.11013 7.16126 7.52959 7.62417 7.99536 8.37770 9.04285 9.27407 9.63924 11.12893 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.070646 B = 0.003714 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.249469 B = 7537.054023 C = 7708.020307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 C -0.149 4.149 4 O -0.382 6.382 5 C 0.053 3.947 6 C 0.126 3.874 7 N -0.304 5.304 8 C -0.078 4.078 9 C 0.035 3.965 10 C 0.092 3.908 11 C -0.505 4.505 12 H 0.059 0.941 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.278 1.278 19 N -0.258 5.258 20 N -0.111 5.111 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 21.157 -4.134 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.301 6.301 5 C -0.024 4.024 6 C 0.004 3.996 7 N -0.101 5.101 8 C -0.226 4.226 9 C -0.102 4.102 10 C 0.054 3.946 11 C -0.543 4.543 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.126 5.126 20 N -0.089 5.089 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.200 0.800 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.970 20.981 -4.455 22.553 hybrid contribution 0.693 -0.577 0.783 1.194 sum -6.277 20.404 -3.672 21.662 Atomic orbital electron populations 1.22314 0.95748 1.02758 1.02640 1.22110 0.93850 0.93674 0.87835 1.21870 1.01872 0.94318 1.02616 1.87816 1.86832 1.19160 1.36247 1.22627 1.01295 0.81971 0.96556 1.21538 1.04655 0.74930 0.98522 1.46987 1.09448 1.08529 1.45168 1.23404 0.93110 0.93646 1.12467 1.23054 0.93401 0.95153 0.98626 1.17732 0.90822 0.87705 0.98379 1.21015 1.03121 1.00456 1.29744 0.92323 1.24972 0.94927 0.98283 0.96208 1.69937 1.12151 1.26877 1.44864 0.86568 0.79041 0.81096 0.80803 1.20085 1.21317 1.20322 1.75078 1.09281 1.10760 1.17454 1.78181 1.17255 0.94934 1.18570 0.91659 0.91559 0.92156 0.92011 0.91909 0.91144 0.91686 0.92463 0.91362 0.88139 0.87345 0.79953 0.94489 0.94265 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.53 37.16 0.35 -0.99 16 2 C 0.08 0.69 3.34 -26.73 -0.09 0.60 16 3 C -0.15 -1.00 9.56 37.16 0.36 -0.64 16 4 O -0.38 -3.96 9.99 -35.23 -0.35 -4.32 16 5 C 0.05 0.59 5.87 37.16 0.22 0.80 16 6 C 0.13 1.46 6.83 -4.04 -0.03 1.43 16 7 N -0.30 -5.11 3.44 -61.26 -0.21 -5.32 16 8 C -0.08 -1.42 11.49 -17.05 -0.20 -1.62 16 9 C 0.03 0.80 6.44 -82.78 -0.53 0.27 16 10 C 0.09 2.42 5.55 -29.03 -0.16 2.26 16 11 C -0.50 -14.65 9.09 -34.44 -0.31 -14.97 16 12 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 15 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 N -0.26 -6.20 12.40 33.29 0.41 -5.79 16 20 N -0.11 -2.26 12.91 60.35 0.78 -1.49 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 24 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 30 H 0.10 1.08 8.14 -51.94 -0.42 0.65 16 31 H 0.11 0.99 8.07 -51.93 -0.42 0.57 16 32 H 0.18 2.62 8.06 -52.49 -0.42 2.19 16 33 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -33.00 304.92 -4.95 -37.95 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -5.40 Total: -5.52 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.49 Total: -11.31 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 1.72 Total: -38.59 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.35 Total: -4.32 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.00 -4.95 -37.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.186 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds