Wall clock time and date at job start Sun Mar 29 2020 22:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 O 1.42903 * 109.47150 * 119.99849 * 2 1 3 5 5 C 1.42899 * 113.99642 * 90.00126 * 4 2 1 6 6 C 1.53007 * 109.46715 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.46672 * 180.02562 * 6 5 4 8 8 C 1.35310 * 125.86801 * 125.32835 * 7 6 5 9 9 C 1.35348 * 106.17503 * 180.10838 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.08997 * 109.47349 * 300.00273 * 1 2 3 22 22 H 1.09006 * 109.46723 * 60.00259 * 1 2 3 23 23 H 1.08992 * 109.46780 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47335 * 240.00282 * 2 1 3 25 25 H 1.09006 * 109.47578 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47397 * 300.00165 * 3 2 1 27 27 H 1.09004 * 109.47375 * 59.99989 * 3 2 1 28 28 H 1.08998 * 109.47441 * 60.00509 * 5 4 2 29 29 H 1.08992 * 109.47311 * 300.00056 * 5 4 2 30 30 H 1.08989 * 109.47010 * 59.99932 * 6 5 4 31 31 H 1.08998 * 109.47091 * 299.99607 * 6 5 4 32 32 H 1.08000 * 126.91429 * 359.96633 * 8 7 6 33 33 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 34 34 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 -2.0782 0.9886 6 6 2.7079 -2.6926 2.2946 7 7 2.9071 -4.1325 2.1117 8 6 4.0512 -4.8120 2.3571 9 6 3.7942 -6.1055 2.0524 10 6 4.7534 -7.2634 2.1532 11 6 4.1514 -8.3405 3.0185 12 1 3.1720 -8.2007 3.4517 13 6 4.8484 -9.5071 3.2520 14 7 6.0408 -9.6774 2.7242 15 14 4.0989 -10.8453 4.3181 16 1 2.8234 -11.3047 3.7121 17 1 5.0421 -11.9883 4.4136 18 1 3.8357 -10.3066 5.6768 19 7 2.5195 -6.1548 1.6496 20 7 2.0220 -4.9695 1.6963 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3632 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1301 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 2.9320 -2.2467 0.1987 29 1 1.2539 -2.5433 0.7124 30 1 1.9757 -2.5241 3.0842 31 1 3.6541 -2.2275 2.5712 32 1 4.9828 -4.4040 2.7204 33 1 5.6893 -6.9225 2.5960 34 1 4.9467 -7.6628 1.1577 35 1 6.5313 -10.4980 2.8887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603175400.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:52 Heat of formation + Delta-G solvation = 15.033702 kcal Electronic energy + Delta-G solvation = -16347.119515 eV Core-core repulsion = 13574.435734 eV Total energy + Delta-G solvation = -2772.683780 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.09206 -39.55849 -36.39797 -35.24620 -33.67948 -32.87895 -30.53359 -29.19085 -28.12450 -25.54506 -25.01928 -22.69386 -22.29613 -21.51390 -18.63873 -18.25817 -17.61632 -17.31053 -16.58204 -16.50818 -15.82201 -15.55779 -14.99114 -14.43891 -14.35731 -14.03059 -13.78325 -13.47895 -13.19635 -13.01068 -12.85547 -12.65526 -12.59752 -12.49976 -12.27788 -11.90004 -11.69334 -11.66129 -11.39187 -10.90524 -10.67153 -10.57688 -9.88757 -8.18276 -6.26913 0.70201 1.34549 1.41159 1.44481 1.52272 1.74405 2.45148 2.69074 3.14616 3.48363 3.73080 3.75922 4.01553 4.07285 4.14868 4.22550 4.25762 4.43220 4.45612 4.50471 4.73375 4.80835 4.87310 4.88939 4.94345 5.26188 5.29536 5.32201 5.43526 5.54596 5.76852 5.77298 6.10789 6.22838 6.81207 7.39674 7.67370 8.92485 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.070646 B = 0.003714 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.249469 B = 7537.054023 C = 7708.020307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.387 6.387 5 C 0.061 3.939 6 C 0.118 3.882 7 N -0.286 5.286 8 C -0.045 4.045 9 C -0.008 4.008 10 C 0.102 3.898 11 C -0.526 4.526 12 H 0.044 0.956 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.961 3.039 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.268 1.268 19 N -0.305 5.305 20 N -0.120 5.120 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.228 0.772 33 H 0.036 0.964 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 22.935 -3.367 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.307 6.307 5 C -0.017 4.017 6 C -0.002 4.002 7 N -0.082 5.082 8 C -0.195 4.195 9 C -0.146 4.146 10 C 0.064 3.936 11 C -0.564 4.564 12 H 0.063 0.937 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.786 3.214 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.193 1.193 19 N -0.172 5.172 20 N -0.099 5.099 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.244 0.756 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.014 22.796 -3.695 24.135 hybrid contribution 0.680 -0.963 0.509 1.284 sum -6.333 21.833 -3.186 22.956 Atomic orbital electron populations 1.22308 0.95345 1.02197 1.03457 1.22355 0.94291 0.94473 0.87259 1.21871 1.01823 0.93154 1.03465 1.87803 1.87011 1.18464 1.37379 1.22442 1.00582 0.82533 0.96150 1.22019 1.07198 0.71775 0.99244 1.47327 1.08251 1.10098 1.42570 1.23814 0.94437 0.91918 1.09315 1.22699 0.93318 0.96354 1.02239 1.17392 0.91572 0.88559 0.96112 1.21271 1.02752 1.01947 1.30467 0.93721 1.25787 0.95334 1.00429 0.97396 1.70031 1.13192 1.27680 1.45783 0.85563 0.78203 0.78406 0.79234 1.20136 1.20067 1.19330 1.74991 1.10138 1.12816 1.19248 1.78068 1.17909 0.94549 1.19370 0.91757 0.89869 0.93383 0.91781 0.91971 0.89382 0.91779 0.92476 0.92741 0.86760 0.83770 0.75563 0.94584 0.97329 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.53 71.98 0.69 -1.73 16 2 C 0.07 1.09 3.34 30.59 0.10 1.19 16 3 C -0.15 -1.62 9.56 71.98 0.69 -0.93 16 4 O -0.39 -7.21 9.99 -148.98 -1.49 -8.69 16 5 C 0.06 1.22 5.87 71.98 0.42 1.64 16 6 C 0.12 2.36 6.83 86.38 0.59 2.95 16 7 N -0.29 -9.00 3.44 -347.73 -1.20 -10.20 16 8 C -0.04 -1.55 11.49 83.49 0.96 -0.59 16 9 C -0.01 -0.38 6.44 41.60 0.27 -0.11 16 10 C 0.10 5.53 5.55 29.10 0.16 5.69 16 11 C -0.53 -31.21 9.09 25.60 0.23 -30.98 16 12 H 0.04 2.71 7.74 -2.91 -0.02 2.69 16 13 C 0.01 0.51 5.46 84.66 0.46 0.98 16 14 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 15 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 N -0.31 -14.89 12.40 -48.60 -0.60 -15.50 16 20 N -0.12 -4.87 12.91 37.02 0.48 -4.39 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 24 H 0.06 0.92 7.79 -2.39 -0.02 0.90 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 29 H 0.05 1.24 7.85 -2.39 -0.02 1.23 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.14 1.94 8.07 -2.39 -0.02 1.92 16 32 H 0.23 5.56 8.06 -2.91 -0.02 5.53 16 33 H 0.04 1.90 8.12 -2.38 -0.02 1.88 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.27 15.02 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -72.62 304.92 5.13 -67.49 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 1.05 Total: 0.83 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 4.57 Total: -21.88 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.04 Total: -85.49 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.49 Total: -8.69 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.62 5.13 -67.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175400.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.525 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds