Wall clock time and date at job start Sun Mar 29 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47092 * 2 1 4 4 C 1.42908 * 113.99759 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47054 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99719 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00155 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46700 * 90.00271 * 15 13 11 17 17 H 1.48501 * 109.46990 * 209.99805 * 15 13 11 18 18 H 1.48495 * 109.47253 * 330.00154 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.09002 * 109.46626 * 60.00138 * 1 2 3 22 22 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47144 * 300.00535 * 1 2 3 24 24 H 1.08999 * 109.47436 * 239.99522 * 2 1 3 25 25 H 1.09002 * 109.46626 * 119.99862 * 2 1 3 26 26 H 1.08997 * 109.46687 * 59.99920 * 4 3 2 27 27 H 1.09004 * 109.46932 * 300.00416 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99804 * 5 4 3 29 29 H 1.09007 * 109.47030 * 300.00000 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.96992 * 119.99928 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 6 5.3507 3.0590 0.0012 7 7 5.7285 4.4745 0.0023 8 6 6.5403 5.0776 0.9013 9 6 6.6167 6.3765 0.5282 10 6 7.4017 7.4663 1.2119 11 6 8.3256 8.1197 0.2165 12 1 8.3423 7.7801 -0.8085 13 6 9.1495 9.1511 0.6147 14 7 9.9554 9.7217 -0.2540 15 14 9.1200 9.7389 2.3875 16 1 10.1132 8.9704 3.1803 17 1 9.4595 11.1838 2.4357 18 1 7.7642 9.5297 2.9559 19 7 5.8584 6.5026 -0.5666 20 7 5.3460 5.3578 -0.8521 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8340 0.9763 -0.8891 27 1 3.8333 0.9765 0.8908 28 1 3.4223 3.4215 0.8911 29 1 3.4230 3.4221 -0.8889 30 1 5.7534 2.5758 -0.8890 31 1 5.7535 2.5751 0.8910 32 1 7.0295 4.6155 1.7459 33 1 6.7150 8.2113 1.6137 34 1 7.9880 7.0368 2.0242 35 1 10.5352 10.4470 0.0262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:42 Heat of formation + Delta-G solvation = 38.998165 kcal Electronic energy + Delta-G solvation = -16120.810171 eV Core-core repulsion = 13349.165568 eV Total energy + Delta-G solvation = -2771.644603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.58150 -38.52944 -35.61958 -33.39029 -32.33601 -31.27357 -30.71844 -28.01541 -26.21634 -23.20647 -23.16680 -22.38052 -21.18323 -19.86834 -17.36362 -16.81597 -16.70069 -16.44147 -15.82107 -14.89597 -14.67281 -14.34054 -13.93680 -13.51736 -13.15395 -13.02202 -12.49323 -12.21172 -12.08872 -12.00959 -11.91047 -11.38493 -11.28897 -11.05059 -10.62600 -10.53687 -10.08986 -9.97991 -9.84429 -9.40990 -9.30275 -8.52138 -8.25090 -5.98006 -3.95934 2.15458 2.63935 3.32697 3.34471 3.40393 3.41759 3.44506 4.38990 4.48049 4.61363 4.64435 4.67440 4.81015 4.89697 4.95878 5.00895 5.05829 5.13603 5.31992 5.34494 5.50506 5.60912 5.72188 5.74990 5.88391 5.95023 6.23727 6.81902 6.87670 7.10789 7.11833 7.23407 7.75049 8.59742 9.10075 9.25320 9.61050 11.15572 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.069870 B = 0.003496 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.650626 B = 8008.119065 C = 8140.837266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.388 6.388 4 C 0.068 3.932 5 C -0.133 4.133 6 C 0.126 3.874 7 N -0.304 5.304 8 C -0.080 4.080 9 C 0.038 3.962 10 C 0.059 3.941 11 C -0.506 4.506 12 H 0.076 0.924 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.264 1.264 19 N -0.254 5.254 20 N -0.103 5.103 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.183 0.817 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 -21.636 4.508 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.307 6.307 4 C -0.009 4.009 5 C -0.171 4.171 6 C 0.004 3.996 7 N -0.099 5.099 8 C -0.229 4.229 9 C -0.099 4.099 10 C 0.020 3.980 11 C -0.545 4.545 12 H 0.094 0.906 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.704 3.296 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.189 1.189 19 N -0.121 5.121 20 N -0.082 5.082 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.371 -21.087 3.220 25.721 hybrid contribution 0.999 -0.300 1.836 2.112 sum -13.372 -21.387 5.056 25.725 Atomic orbital electron populations 1.21752 0.93655 1.02254 1.03329 1.22472 0.95736 0.83633 1.00088 1.87906 1.20789 1.26568 1.95442 1.22317 0.81743 0.96332 1.00524 1.21750 0.93641 0.96110 1.05637 1.21712 0.96115 0.76928 1.04859 1.47112 1.33123 1.09882 1.19813 1.23335 1.03813 0.95025 1.00697 1.22504 0.98609 0.94551 0.94266 1.18151 0.93789 0.90652 0.95377 1.20926 1.19476 1.16840 0.97216 0.90587 1.24984 0.95089 0.96010 0.97329 1.69904 1.24809 1.24926 1.34364 0.86820 0.78912 0.78199 0.85643 1.20256 1.21243 1.18877 1.75109 1.10303 1.13119 1.13603 1.78212 1.21302 0.93642 1.15047 0.91723 0.91072 0.91788 0.93307 0.93380 0.92773 0.92983 0.90182 0.89051 0.88687 0.88017 0.80037 0.94426 0.95131 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.41 6.66 37.16 0.25 0.65 16 3 O -0.39 -3.88 10.34 -35.23 -0.36 -4.24 16 4 C 0.07 0.54 5.94 37.15 0.22 0.76 16 5 C -0.13 -1.33 5.71 -26.73 -0.15 -1.48 16 6 C 0.13 1.27 6.46 -4.04 -0.03 1.24 16 7 N -0.30 -4.94 3.44 -61.26 -0.21 -5.15 16 8 C -0.08 -1.40 11.49 -17.05 -0.20 -1.60 16 9 C 0.04 0.86 6.44 -82.77 -0.53 0.33 16 10 C 0.06 1.46 4.62 -29.03 -0.13 1.32 16 11 C -0.51 -14.94 9.64 -34.44 -0.33 -15.27 16 12 H 0.08 2.51 7.98 -52.49 -0.42 2.09 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 15 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 19 N -0.25 -6.14 12.40 33.29 0.41 -5.72 16 20 N -0.10 -2.12 12.92 60.35 0.78 -1.34 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.09 8.12 -51.93 -0.42 0.67 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 34 H 0.03 0.69 7.55 -51.93 -0.39 0.29 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -35.59 302.55 -4.76 -40.35 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -5.42 Total: -4.99 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.62 Total: -12.73 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 1.76 Total: -39.74 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.36 Total: -4.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.59 -4.76 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.349 kcal (2) G-P(sol) polarization free energy of solvation -35.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds