Wall clock time and date at job start Sun Mar 29 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47092 * 2 1 4 4 C 1.42908 * 113.99759 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47054 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99719 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00155 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46700 * 90.00271 * 15 13 11 17 17 H 1.48501 * 109.46990 * 209.99805 * 15 13 11 18 18 H 1.48495 * 109.47253 * 330.00154 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.09002 * 109.46626 * 60.00138 * 1 2 3 22 22 H 1.09004 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47144 * 300.00535 * 1 2 3 24 24 H 1.08999 * 109.47436 * 239.99522 * 2 1 3 25 25 H 1.09002 * 109.46626 * 119.99862 * 2 1 3 26 26 H 1.08997 * 109.46687 * 59.99920 * 4 3 2 27 27 H 1.09004 * 109.46932 * 300.00416 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99804 * 5 4 3 29 29 H 1.09007 * 109.47030 * 300.00000 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.96992 * 119.99928 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 6 5.3507 3.0590 0.0012 7 7 5.7285 4.4745 0.0023 8 6 6.5403 5.0776 0.9013 9 6 6.6167 6.3765 0.5282 10 6 7.4017 7.4663 1.2119 11 6 8.3256 8.1197 0.2165 12 1 8.3423 7.7801 -0.8085 13 6 9.1495 9.1511 0.6147 14 7 9.9554 9.7217 -0.2540 15 14 9.1200 9.7389 2.3875 16 1 10.1132 8.9704 3.1803 17 1 9.4595 11.1838 2.4357 18 1 7.7642 9.5297 2.9559 19 7 5.8584 6.5026 -0.5666 20 7 5.3460 5.3578 -0.8521 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8340 0.9763 -0.8891 27 1 3.8333 0.9765 0.8908 28 1 3.4223 3.4215 0.8911 29 1 3.4230 3.4221 -0.8889 30 1 5.7534 2.5758 -0.8890 31 1 5.7535 2.5751 0.8910 32 1 7.0295 4.6155 1.7459 33 1 6.7150 8.2113 1.6137 34 1 7.9880 7.0368 2.0242 35 1 10.5352 10.4470 0.0262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603224550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:42 Heat of formation + Delta-G solvation = 12.594868 kcal Electronic energy + Delta-G solvation = -16121.955104 eV Core-core repulsion = 13349.165568 eV Total energy + Delta-G solvation = -2772.789536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.05440 -39.16416 -36.74026 -35.29677 -33.47298 -32.99366 -31.51321 -29.82080 -27.17364 -25.11970 -23.68899 -23.38699 -22.55646 -21.31399 -18.90980 -18.36120 -17.52931 -17.30649 -16.98802 -16.30241 -15.71741 -15.64396 -15.21790 -14.94949 -14.23550 -14.15806 -13.87412 -13.66906 -13.11142 -12.85029 -12.78761 -12.56808 -12.39911 -12.32128 -11.96434 -11.89487 -11.87457 -11.61423 -11.41111 -10.86023 -10.72483 -10.55056 -9.86683 -8.23391 -6.28763 0.76428 1.41684 1.46603 1.55380 1.58385 1.75952 2.42200 2.70370 3.10724 3.54459 3.77423 3.90206 4.00227 4.14857 4.18952 4.27404 4.32395 4.39520 4.43478 4.48519 4.51595 4.70393 4.85480 4.92445 5.03611 5.04744 5.13163 5.26826 5.35561 5.38076 5.63648 5.85019 6.28205 6.33443 6.76557 7.32924 7.71514 8.94563 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.069870 B = 0.003496 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.650626 B = 8008.119065 C = 8140.837266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.051 3.949 3 O -0.420 6.420 4 C 0.070 3.930 5 C -0.126 4.126 6 C 0.115 3.885 7 N -0.287 5.287 8 C -0.044 4.044 9 C -0.012 4.012 10 C 0.066 3.934 11 C -0.518 4.518 12 H 0.016 0.984 13 C 0.000 4.000 14 N -0.956 5.956 15 Si 0.961 3.039 16 H -0.254 1.254 17 H -0.288 1.288 18 H -0.242 1.242 19 N -0.314 5.314 20 N -0.125 5.125 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.237 0.763 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 -24.346 7.532 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.340 6.340 4 C -0.006 4.006 5 C -0.165 4.165 6 C -0.004 4.004 7 N -0.082 5.082 8 C -0.195 4.195 9 C -0.151 4.151 10 C 0.028 3.972 11 C -0.557 4.557 12 H 0.035 0.965 13 C -0.196 4.196 14 N -0.597 5.597 15 Si 0.783 3.217 16 H -0.178 1.178 17 H -0.214 1.214 18 H -0.166 1.166 19 N -0.180 5.180 20 N -0.103 5.103 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.168 0.832 32 H 0.253 0.747 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.552 -23.849 6.217 28.622 hybrid contribution 0.993 0.391 0.780 1.322 sum -13.559 -23.458 6.998 27.984 Atomic orbital electron populations 1.21795 0.93538 1.03352 1.02423 1.22662 0.95971 0.82567 1.01286 1.87867 1.21980 1.28460 1.95718 1.22356 0.81140 0.94644 1.02501 1.21637 0.93546 0.97665 1.03611 1.22330 0.96293 0.73573 1.08219 1.47605 1.31200 1.11463 1.17946 1.23909 1.01727 0.93092 1.00760 1.22471 1.00608 0.96585 0.95399 1.17979 0.93104 0.91289 0.94876 1.21142 1.20955 1.17674 0.95911 0.96524 1.26114 0.94202 0.95857 1.03428 1.70095 1.26163 1.25909 1.37523 0.85510 0.80462 0.77396 0.78346 1.17827 1.21400 1.16550 1.75020 1.12173 1.15456 1.15361 1.78088 1.22090 0.93680 1.16468 0.92785 0.88990 0.92535 0.92290 0.91870 0.91324 0.90325 0.91404 0.91998 0.86776 0.83220 0.74719 0.94893 0.91950 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.42 -7.70 10.34 -148.98 -1.54 -9.24 16 4 C 0.07 0.90 5.94 71.98 0.43 1.33 16 5 C -0.13 -2.27 5.71 30.59 0.17 -2.09 16 6 C 0.12 1.88 6.46 86.38 0.56 2.44 16 7 N -0.29 -8.70 3.44 -347.73 -1.20 -9.89 16 8 C -0.04 -1.42 11.49 83.49 0.96 -0.46 16 9 C -0.01 -0.54 6.44 41.60 0.27 -0.27 16 10 C 0.07 3.23 4.62 29.10 0.13 3.36 16 11 C -0.52 -31.62 9.64 25.60 0.25 -31.37 16 12 H 0.02 1.16 7.98 -2.91 -0.02 1.14 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 14 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 15 Si 0.96 43.88 27.47 68.60 1.88 45.76 16 16 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 19 N -0.31 -15.64 12.40 -48.59 -0.60 -16.24 16 20 N -0.12 -5.15 12.92 37.02 0.48 -4.67 16 21 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.15 1.11 8.07 -2.38 -0.02 1.10 16 32 H 0.24 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.03 1.61 7.20 -2.39 -0.02 1.59 16 34 H 0.06 2.60 7.55 -2.39 -0.02 2.58 16 35 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -84.26 302.55 4.77 -79.49 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.00 Total: 3.15 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.45 Total: -26.49 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -1.02 Total: -92.67 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.54 Total: -9.24 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -84.26 4.77 -79.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.088 kcal (2) G-P(sol) polarization free energy of solvation -84.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds