Wall clock time and date at job start Sun Mar 29 2020 22:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00072 * 2 1 4 4 C 1.53002 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47195 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47416 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00183 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.09002 * 109.47417 * 60.00009 * 1 2 3 22 22 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46555 * 300.00180 * 1 2 3 24 24 H 1.08992 * 109.47386 * 60.00017 * 3 2 1 25 25 H 1.09007 * 109.46886 * 299.99912 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99445 * 4 3 2 27 27 H 1.09004 * 109.46658 * 300.00018 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99547 * 5 4 3 29 29 H 1.09007 * 109.47030 * 299.99742 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.97003 * 119.99723 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 -0.0013 6 6 5.6831 2.4614 -0.0026 7 7 6.2790 3.7997 -0.0026 8 6 7.1764 4.2680 0.8953 9 6 7.4560 5.5385 0.5214 10 6 8.4034 6.4914 1.2037 11 6 9.4177 6.9908 0.2073 12 1 9.3799 6.6523 -0.8176 13 6 10.3941 7.8798 0.6042 14 7 10.4404 8.2915 1.8523 15 14 11.6510 8.4993 -0.6310 16 1 11.1404 9.7336 -1.2801 17 1 12.9262 8.7990 0.0682 18 1 11.8854 7.4579 -1.6634 19 7 6.7260 5.7818 -0.5729 20 7 6.0395 4.7318 -0.8573 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8901 26 1 3.8567 0.6437 -0.8908 27 1 3.8574 0.6435 0.8892 28 1 3.8365 3.1234 0.8887 29 1 3.8358 3.1229 -0.8914 30 1 6.0039 1.9204 -0.8928 31 1 6.0054 1.9205 0.8873 32 1 7.5875 3.7350 1.7399 33 1 7.8429 7.3354 1.6056 34 1 8.9155 5.9754 2.0159 35 1 11.1271 8.9173 2.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603228348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:12 Heat of formation + Delta-G solvation = 32.560737 kcal Electronic energy + Delta-G solvation = -16067.073277 eV Core-core repulsion = 13295.149526 eV Total energy + Delta-G solvation = -2771.923751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48436 -38.39423 -36.03318 -33.60900 -32.68750 -31.01523 -29.08563 -27.38349 -26.59786 -24.15566 -23.36065 -21.73844 -21.11342 -19.91715 -16.85860 -16.77840 -16.64273 -16.20194 -15.67603 -15.26338 -14.94185 -14.48458 -14.05335 -13.41432 -13.09642 -12.66401 -12.28041 -12.20693 -11.94779 -11.82354 -11.62294 -11.36357 -11.10885 -10.91675 -10.71867 -10.61895 -10.06234 -10.04239 -9.68202 -9.41475 -9.26069 -8.42189 -8.10758 -5.97528 -3.97911 2.24804 2.77531 3.38225 3.40692 3.42809 3.46147 3.54022 4.40612 4.50456 4.52891 4.71652 4.83795 4.87771 4.97092 5.05018 5.10497 5.16298 5.26359 5.31395 5.33445 5.40052 5.53761 5.77170 5.88039 5.95201 6.10597 6.35391 6.76632 7.15212 7.21621 7.54751 7.64262 8.00427 8.39231 9.05588 9.33276 9.64814 11.13629 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.082891 B = 0.003319 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.712673 B = 8434.544314 C = 8525.963466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.123 3.877 7 N -0.305 5.305 8 C -0.083 4.083 9 C 0.034 3.966 10 C 0.092 3.908 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.262 5.262 20 N -0.110 5.110 21 H 0.041 0.959 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.781 -16.724 -0.556 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.153 4.153 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.101 5.101 8 C -0.232 4.232 9 C -0.104 4.104 10 C 0.053 3.947 11 C -0.541 4.541 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 N -0.130 5.130 20 N -0.088 5.088 21 H 0.060 0.940 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.361 -16.403 -1.703 23.230 hybrid contribution 1.063 0.122 0.400 1.142 sum -15.298 -16.282 -1.304 22.379 Atomic orbital electron populations 1.22744 0.80899 1.02761 1.00097 1.87853 1.19836 1.28171 1.95474 1.22529 0.93892 0.84577 1.00598 1.21408 0.93338 0.96680 1.03854 1.21767 0.93204 0.97367 1.04511 1.21866 0.93827 0.79401 1.04762 1.47181 1.30356 1.12703 1.19825 1.23386 1.00949 0.98086 1.00731 1.23030 0.98873 0.94459 0.93988 1.17728 0.90598 0.91635 0.94719 1.21050 1.11406 1.25705 0.95964 0.92303 1.24976 0.97865 0.96293 0.95333 1.69946 1.34758 1.33249 1.15896 0.86507 0.80516 0.79286 0.81204 1.20551 1.21301 1.19949 1.75073 1.07488 1.16243 1.14160 1.78149 1.21920 0.93520 1.15248 0.93991 0.89609 0.94031 0.93110 0.92975 0.90519 0.90650 0.90832 0.89782 0.88880 0.88106 0.80163 0.94336 0.94555 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.70 10.70 -35.23 -0.38 -4.07 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 C -0.11 -0.87 5.58 -26.73 -0.15 -1.02 16 5 C -0.13 -1.20 5.34 -26.73 -0.14 -1.35 16 6 C 0.12 1.29 6.46 -4.04 -0.03 1.26 16 7 N -0.30 -5.05 3.44 -61.26 -0.21 -5.26 16 8 C -0.08 -1.52 11.49 -17.05 -0.20 -1.71 16 9 C 0.03 0.78 6.44 -82.77 -0.53 0.25 16 10 C 0.09 2.43 5.55 -29.03 -0.16 2.27 16 11 C -0.50 -14.65 9.09 -34.44 -0.31 -14.97 16 12 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 N -0.26 -6.34 12.40 33.29 0.41 -5.93 16 20 N -0.11 -2.24 12.92 60.35 0.78 -1.46 16 21 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 33 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.95 8.12 -51.93 -0.42 0.52 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 305.80 15.07 4.61 4.61 Total: -1.00 -34.14 305.80 -4.81 -38.96 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -5.45 Total: -6.30 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.29 Total: -11.71 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.72 Total: -38.75 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.07 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.14 -4.81 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603228348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.516 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds