Wall clock time and date at job start Sun Mar 29 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00072 * 2 1 4 4 C 1.53002 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47181 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.35309 * 125.87027 * 124.97307 * 7 6 5 9 9 C 1.35353 * 106.17498 * 179.97438 * 8 7 6 10 10 C 1.50706 * 126.75076 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46793 * 124.99895 * 10 9 8 12 12 H 1.08001 * 119.99975 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99507 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47195 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47416 * 209.99962 * 15 13 11 18 18 H 1.48503 * 109.47059 * 330.00183 * 15 13 11 19 19 N 1.33775 * 106.49785 * 359.97438 * 9 8 7 20 20 N 1.28637 * 108.88137 * 0.02562 * 19 9 8 21 21 H 1.09002 * 109.47417 * 60.00009 * 1 2 3 22 22 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46555 * 300.00180 * 1 2 3 24 24 H 1.08992 * 109.47386 * 60.00017 * 3 2 1 25 25 H 1.09007 * 109.46886 * 299.99912 * 3 2 1 26 26 H 1.08997 * 109.46834 * 59.99445 * 4 3 2 27 27 H 1.09004 * 109.46658 * 300.00018 * 4 3 2 28 28 H 1.09001 * 109.46985 * 59.99547 * 5 4 3 29 29 H 1.09007 * 109.47030 * 299.99742 * 5 4 3 30 30 H 1.08997 * 109.46834 * 59.99681 * 6 5 4 31 31 H 1.09007 * 109.46928 * 299.99805 * 6 5 4 32 32 H 1.08002 * 126.91313 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.46870 * 244.99788 * 10 9 8 34 34 H 1.09004 * 109.46999 * 5.00398 * 10 9 8 35 35 H 0.97003 * 119.99723 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 -0.0013 6 6 5.6831 2.4614 -0.0026 7 7 6.2790 3.7997 -0.0026 8 6 7.1764 4.2680 0.8953 9 6 7.4560 5.5385 0.5214 10 6 8.4034 6.4914 1.2037 11 6 9.4177 6.9908 0.2073 12 1 9.3799 6.6523 -0.8176 13 6 10.3941 7.8798 0.6042 14 7 10.4404 8.2915 1.8523 15 14 11.6510 8.4993 -0.6310 16 1 11.1404 9.7336 -1.2801 17 1 12.9262 8.7990 0.0682 18 1 11.8854 7.4579 -1.6634 19 7 6.7260 5.7818 -0.5729 20 7 6.0395 4.7318 -0.8573 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8901 26 1 3.8567 0.6437 -0.8908 27 1 3.8574 0.6435 0.8892 28 1 3.8365 3.1234 0.8887 29 1 3.8358 3.1229 -0.8914 30 1 6.0039 1.9204 -0.8928 31 1 6.0054 1.9205 0.8873 32 1 7.5875 3.7350 1.7399 33 1 7.8429 7.3354 1.6056 34 1 8.9155 5.9754 2.0159 35 1 11.1271 8.9173 2.1314 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603228348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:11 Heat of formation + Delta-G solvation = 8.947947 kcal Electronic energy + Delta-G solvation = -16068.097204 eV Core-core repulsion = 13295.149526 eV Total energy + Delta-G solvation = -2772.947678 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.01507 -39.01561 -37.04061 -35.47762 -34.03052 -32.82819 -30.08571 -29.15718 -27.27774 -25.48894 -24.98410 -22.60512 -22.48002 -21.37091 -18.53202 -17.98626 -17.51248 -17.25799 -16.90782 -16.53338 -15.93520 -15.76391 -15.49941 -14.60793 -14.36584 -13.97430 -13.84590 -13.55772 -13.01611 -12.87070 -12.72178 -12.63209 -12.49248 -12.37530 -11.98451 -11.88791 -11.71979 -11.62993 -11.34592 -10.80437 -10.63682 -10.58000 -9.83960 -8.18381 -6.26930 0.78982 1.40572 1.42756 1.53081 1.61171 1.78690 2.44957 2.79303 3.14352 3.56362 3.76663 3.81388 4.04998 4.17957 4.28303 4.32756 4.40775 4.48974 4.50333 4.52931 4.57163 4.63389 4.82237 4.85299 4.92573 5.17133 5.25152 5.32730 5.46735 5.55876 5.77441 5.88538 6.19999 6.23439 6.81391 7.39633 7.74007 8.92559 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.082891 B = 0.003319 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.712673 B = 8434.544314 C = 8525.963466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.056 3.944 4 C -0.105 4.105 5 C -0.121 4.121 6 C 0.109 3.891 7 N -0.285 5.285 8 C -0.052 4.052 9 C -0.010 4.010 10 C 0.102 3.898 11 C -0.523 4.523 12 H 0.044 0.956 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.962 3.038 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.312 5.312 20 N -0.120 5.120 21 H 0.047 0.953 22 H 0.097 0.903 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.225 0.775 33 H 0.007 0.993 34 H 0.035 0.965 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 -18.725 -0.531 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.020 4.020 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.010 4.010 7 N -0.081 5.081 8 C -0.202 4.202 9 C -0.149 4.149 10 C 0.063 3.937 11 C -0.562 4.562 12 H 0.062 0.938 13 C -0.191 4.191 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.178 5.178 20 N -0.098 5.098 21 H 0.065 0.935 22 H 0.116 0.884 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.242 0.758 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.408 -18.430 -1.694 24.734 hybrid contribution 0.951 0.620 0.417 1.209 sum -15.457 -17.810 -1.278 23.617 Atomic orbital electron populations 1.22919 0.79649 1.03834 1.00720 1.87811 1.21338 1.28736 1.95605 1.22585 0.94279 0.84359 1.00792 1.21307 0.92862 0.95425 1.04679 1.21656 0.92478 0.98291 1.03521 1.22514 0.94257 0.76513 1.07684 1.47636 1.28797 1.13762 1.17865 1.23794 0.99311 0.96289 1.00841 1.22681 1.00501 0.96377 0.95318 1.17385 0.90493 0.91456 0.94339 1.21282 1.12619 1.26445 0.95829 0.93813 1.25800 0.99740 0.96281 0.97252 1.70038 1.35578 1.33656 1.17452 0.85492 0.78307 0.78605 0.78880 1.20174 1.19845 1.19611 1.74981 1.09000 1.18474 1.15393 1.78023 1.21851 0.93727 1.16242 0.93453 0.88408 0.93336 0.92756 0.93061 0.90049 0.89424 0.91277 0.91448 0.87038 0.84186 0.75821 0.97490 0.94718 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.06 10.70 -148.98 -1.59 -8.66 16 3 C 0.06 0.81 5.94 71.98 0.43 1.24 16 4 C -0.10 -1.30 5.58 30.59 0.17 -1.13 16 5 C -0.12 -1.95 5.34 30.59 0.16 -1.78 16 6 C 0.11 1.89 6.46 86.38 0.56 2.45 16 7 N -0.28 -8.80 3.44 -347.73 -1.20 -10.00 16 8 C -0.05 -1.79 11.49 83.49 0.96 -0.84 16 9 C -0.01 -0.49 6.44 41.60 0.27 -0.22 16 10 C 0.10 5.55 5.55 29.10 0.16 5.72 16 11 C -0.52 -31.24 9.09 25.60 0.23 -31.01 16 12 H 0.04 2.68 7.74 -2.91 -0.02 2.66 16 13 C 0.01 0.43 5.46 84.66 0.46 0.90 16 14 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 15 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 N -0.31 -15.35 12.40 -48.59 -0.60 -15.95 16 20 N -0.12 -4.83 12.92 37.02 0.48 -4.36 16 21 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 22 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.33 8.12 -2.38 -0.02 1.31 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.14 1.42 8.07 -2.38 -0.02 1.40 16 32 H 0.23 5.53 8.06 -2.91 -0.02 5.50 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.03 1.84 8.12 -2.39 -0.02 1.83 16 35 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -75.70 305.80 5.10 -70.60 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 1.05 Total: -0.81 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.65 Total: -23.16 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.04 Total: -85.94 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.59 Total: -8.66 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.70 5.10 -70.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603228348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.550 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds