Wall clock time and date at job start Sun Mar 29 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47136 * 2 1 4 4 O 1.42893 * 109.47606 * 239.99303 * 2 1 3 5 5 C 1.53004 * 109.46501 * 119.99421 * 2 1 3 6 6 C 1.53007 * 109.46798 * 185.00189 * 5 2 1 7 7 N 1.46503 * 109.46672 * 180.02562 * 6 5 2 8 8 C 1.35310 * 125.86801 * 125.32835 * 7 6 5 9 9 C 1.35348 * 106.17503 * 180.10838 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.08996 * 109.47492 * 300.00661 * 1 2 3 22 22 H 1.09007 * 109.46551 * 60.00168 * 1 2 3 23 23 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47023 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.46921 * 299.99447 * 3 2 1 26 26 H 1.09006 * 109.47143 * 59.99785 * 3 2 1 27 27 H 0.96697 * 114.00666 * 300.00872 * 4 2 1 28 28 H 1.08998 * 109.47115 * 65.00751 * 5 2 1 29 29 H 1.08992 * 109.47554 * 305.00348 * 5 2 1 30 30 H 1.08989 * 109.47010 * 60.00281 * 6 5 2 31 31 H 1.08998 * 109.47091 * 299.99956 * 6 5 2 32 32 H 1.08000 * 126.91429 * 359.96633 * 8 7 6 33 33 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 34 34 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0399 -0.7212 1.2494 6 6 3.5647 -0.6132 1.3139 7 7 4.0530 -1.3042 2.5099 8 6 4.9862 -2.2837 2.5342 9 6 5.1308 -2.6346 3.8333 10 6 6.0546 -3.6898 4.3849 11 6 6.9413 -3.0796 5.4396 12 1 6.8452 -2.0325 5.6862 13 6 7.8710 -3.8595 6.0943 14 7 7.9877 -5.1347 5.7943 15 14 8.9648 -3.1049 7.4070 16 1 8.1212 -2.5587 8.5004 17 1 9.8718 -4.1458 7.9540 18 1 9.7714 -2.0102 6.8102 19 7 4.2965 -1.8567 4.5321 20 7 3.6726 -1.0795 3.7188 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.7211 -1.5953 -1.2328 28 1 1.7516 -1.7714 1.2058 29 1 1.6052 -0.2617 2.1370 30 1 3.8530 0.4370 1.3575 31 1 3.9994 -1.0728 0.4263 32 1 5.5088 -2.7028 1.6871 33 1 6.6705 -4.0904 3.5797 34 1 5.4656 -4.4938 4.8261 35 1 8.6420 -5.6833 6.2546 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603229618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:44 Heat of formation + Delta-G solvation = 28.816697 kcal Electronic energy + Delta-G solvation = -16690.085788 eV Core-core repulsion = 13917.999683 eV Total energy + Delta-G solvation = -2772.086105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.48479 -38.98098 -34.95071 -33.35843 -32.64753 -31.01470 -29.54537 -27.77635 -27.32092 -24.59067 -23.34763 -21.14837 -20.72606 -19.85128 -17.12841 -16.79602 -16.20489 -15.75724 -15.39461 -14.75556 -14.50812 -14.08590 -13.91145 -13.37860 -12.75658 -12.59567 -12.47111 -12.23857 -12.16014 -12.00445 -11.62447 -11.44590 -11.00853 -10.96209 -10.69633 -10.63532 -10.40431 -10.04244 -9.66733 -9.40326 -9.24786 -8.40922 -8.10284 -5.96991 -3.97476 2.26019 2.81970 3.40183 3.42637 3.45130 3.54353 3.83539 4.34804 4.42300 4.47929 4.53304 4.68877 4.94394 5.07253 5.22498 5.24408 5.33055 5.39650 5.43541 5.52501 5.59343 5.73560 5.76751 5.89702 5.93110 6.11457 6.36903 7.15957 7.22437 7.29770 7.55118 7.64735 8.00775 8.39728 9.05685 9.34137 9.65162 11.14148 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.060244 B = 0.004149 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.662762 B = 6746.359198 C = 6872.587929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 C -0.146 4.146 4 O -0.561 6.561 5 C -0.157 4.157 6 C 0.123 3.877 7 N -0.304 5.304 8 C -0.083 4.083 9 C 0.033 3.967 10 C 0.092 3.908 11 C -0.504 4.504 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.278 1.278 19 N -0.263 5.263 20 N -0.111 5.111 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.378 0.622 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.181 0.819 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 9.025 -14.922 21.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.203 4.203 4 O -0.367 6.367 5 C -0.196 4.196 6 C 0.001 3.999 7 N -0.100 5.100 8 C -0.232 4.232 9 C -0.104 4.104 10 C 0.054 3.946 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.130 5.130 20 N -0.090 5.090 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.225 0.775 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.198 0.802 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.327 10.300 -14.088 21.959 hybrid contribution 1.047 -0.798 -0.010 1.317 sum -12.280 9.502 -14.098 20.972 Atomic orbital electron populations 1.22469 0.95200 1.02729 1.03089 1.21156 0.92958 0.93048 0.83886 1.21875 1.02240 0.93351 1.02864 1.86551 1.77211 1.29143 1.43836 1.22580 0.94540 1.02393 1.00050 1.21955 0.95377 0.98368 0.84179 1.47231 1.28327 1.26625 1.07813 1.23388 1.00369 0.98139 1.01264 1.23028 0.98224 0.99989 0.89176 1.17718 0.90924 0.89829 0.96164 1.21019 1.17427 0.96193 1.19615 0.92355 1.24972 0.97400 0.94821 0.97203 1.69939 1.35820 1.05543 1.42558 0.86571 0.80239 0.78669 0.82044 1.20093 1.21316 1.20339 1.75066 1.08188 1.05072 1.24663 1.78132 1.22217 1.21919 0.86718 0.91234 0.91541 0.92166 0.91466 0.91623 0.90694 0.77460 0.90746 0.89065 0.88831 0.87788 0.80222 0.94575 0.94346 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 8.81 37.16 0.33 -0.84 16 2 C 0.13 1.00 1.09 -90.62 -0.10 0.90 16 3 C -0.15 -1.09 8.36 37.16 0.31 -0.78 16 4 O -0.56 -4.51 12.51 -35.23 -0.44 -4.95 16 5 C -0.16 -1.50 4.61 -26.73 -0.12 -1.62 16 6 C 0.12 1.39 5.86 -4.04 -0.02 1.37 16 7 N -0.30 -5.14 3.44 -61.26 -0.21 -5.35 16 8 C -0.08 -1.55 11.49 -17.05 -0.20 -1.74 16 9 C 0.03 0.78 6.44 -82.78 -0.53 0.24 16 10 C 0.09 2.45 5.55 -29.03 -0.16 2.29 16 11 C -0.50 -14.75 9.09 -34.44 -0.31 -15.07 16 12 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 15 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 N -0.26 -6.38 12.40 33.29 0.41 -5.97 16 20 N -0.11 -2.29 12.91 60.35 0.78 -1.51 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.38 1.88 9.05 45.56 0.41 2.29 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.09 0.98 6.34 -51.94 -0.33 0.65 16 31 H 0.10 1.00 7.75 -51.93 -0.40 0.59 16 32 H 0.18 2.69 8.06 -52.49 -0.42 2.26 16 33 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -34.17 299.00 -4.56 -38.73 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.42 Total: -2.91 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.91 Total: -13.68 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 1.72 Total: -38.99 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.44 Total: -4.95 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.17 -4.56 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603229618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.547 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds