Wall clock time and date at job start Sun Mar 29 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47136 * 2 1 4 4 O 1.42893 * 109.47606 * 239.99303 * 2 1 3 5 5 C 1.53004 * 109.46501 * 119.99421 * 2 1 3 6 6 C 1.53007 * 109.46798 * 185.00189 * 5 2 1 7 7 N 1.46503 * 109.46672 * 180.02562 * 6 5 2 8 8 C 1.35310 * 125.86801 * 125.32835 * 7 6 5 9 9 C 1.35348 * 106.17503 * 180.10838 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.08996 * 109.47492 * 300.00661 * 1 2 3 22 22 H 1.09007 * 109.46551 * 60.00168 * 1 2 3 23 23 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47023 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.46921 * 299.99447 * 3 2 1 26 26 H 1.09006 * 109.47143 * 59.99785 * 3 2 1 27 27 H 0.96697 * 114.00666 * 300.00872 * 4 2 1 28 28 H 1.08998 * 109.47115 * 65.00751 * 5 2 1 29 29 H 1.08992 * 109.47554 * 305.00348 * 5 2 1 30 30 H 1.08989 * 109.47010 * 60.00281 * 6 5 2 31 31 H 1.08998 * 109.47091 * 299.99956 * 6 5 2 32 32 H 1.08000 * 126.91429 * 359.96633 * 8 7 6 33 33 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 34 34 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1666 5 6 2.0399 -0.7212 1.2494 6 6 3.5647 -0.6132 1.3139 7 7 4.0530 -1.3042 2.5099 8 6 4.9862 -2.2837 2.5342 9 6 5.1308 -2.6346 3.8333 10 6 6.0546 -3.6898 4.3849 11 6 6.9413 -3.0796 5.4396 12 1 6.8452 -2.0325 5.6862 13 6 7.8710 -3.8595 6.0943 14 7 7.9877 -5.1347 5.7943 15 14 8.9648 -3.1049 7.4070 16 1 8.1212 -2.5587 8.5004 17 1 9.8718 -4.1458 7.9540 18 1 9.7714 -2.0102 6.8102 19 7 4.2965 -1.8567 4.5321 20 7 3.6726 -1.0795 3.7188 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.7211 -1.5953 -1.2328 28 1 1.7516 -1.7714 1.2058 29 1 1.6052 -0.2617 2.1370 30 1 3.8530 0.4370 1.3575 31 1 3.9994 -1.0728 0.4263 32 1 5.5088 -2.7028 1.6871 33 1 6.6705 -4.0904 3.5797 34 1 5.4656 -4.4938 4.8261 35 1 8.6420 -5.6833 6.2546 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603229618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:44 Heat of formation + Delta-G solvation = 3.527469 kcal Electronic energy + Delta-G solvation = -16691.182412 eV Core-core repulsion = 13917.999683 eV Total energy + Delta-G solvation = -2773.182728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.04662 -39.64323 -36.26545 -35.21882 -33.59497 -32.85663 -30.59771 -29.23077 -28.31754 -25.69709 -25.35356 -22.63079 -21.78608 -21.01441 -18.57605 -18.07385 -17.74627 -16.85312 -16.54538 -16.26846 -15.77567 -15.16890 -15.02006 -14.47380 -14.19914 -14.14703 -13.65261 -13.24252 -13.03467 -12.96968 -12.79584 -12.65729 -12.57837 -12.57383 -12.22214 -11.85301 -11.67096 -11.63732 -11.38661 -11.09909 -10.69663 -10.57717 -9.85863 -8.18583 -6.27436 0.76347 1.40557 1.44184 1.51719 1.57958 1.76535 2.44876 3.14133 3.26702 3.53758 3.64218 3.73215 3.81823 4.05279 4.21931 4.26979 4.31410 4.47454 4.57446 4.72150 4.80264 4.90064 4.94803 4.98039 5.08848 5.25993 5.29850 5.34524 5.45015 5.54563 5.76754 5.84963 6.22638 6.80553 6.84826 7.39166 7.71721 8.92219 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.060244 B = 0.004149 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.662762 B = 6746.359198 C = 6872.587929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.139 3.861 3 C -0.151 4.151 4 O -0.571 6.571 5 C -0.150 4.150 6 C 0.111 3.889 7 N -0.284 5.284 8 C -0.055 4.055 9 C -0.009 4.009 10 C 0.102 3.898 11 C -0.526 4.526 12 H 0.044 0.956 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.962 3.038 16 H -0.275 1.275 17 H -0.275 1.275 18 H -0.268 1.268 19 N -0.310 5.310 20 N -0.118 5.118 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.391 0.609 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.222 0.778 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 10.058 -16.425 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.098 3.902 3 C -0.208 4.208 4 O -0.380 6.380 5 C -0.189 4.189 6 C -0.008 4.008 7 N -0.080 5.080 8 C -0.205 4.205 9 C -0.147 4.147 10 C 0.064 3.936 11 C -0.565 4.565 12 H 0.062 0.938 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.200 1.200 18 H -0.193 1.193 19 N -0.177 5.177 20 N -0.097 5.097 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.241 0.759 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.238 0.762 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.375 11.350 -15.612 23.483 hybrid contribution 0.977 -1.090 0.325 1.499 sum -12.399 10.260 -15.287 22.197 Atomic orbital electron populations 1.22450 0.94303 1.03211 1.03375 1.21061 0.93518 0.92793 0.82820 1.21935 1.02126 0.93346 1.03387 1.86530 1.77454 1.30357 1.43638 1.22545 0.93058 1.02595 1.00667 1.22526 0.96730 0.98903 0.82613 1.47647 1.26688 1.25404 1.08212 1.23767 0.99257 0.96952 1.00507 1.22675 0.99633 1.01042 0.91350 1.17383 0.90805 0.90019 0.95441 1.21264 1.18496 0.95765 1.20924 0.93762 1.25797 0.98656 0.95259 0.99235 1.70034 1.36469 1.06637 1.43560 0.85551 0.78427 0.78256 0.79094 1.20092 1.20008 1.19342 1.74978 1.09562 1.06471 1.26674 1.78011 1.22205 1.21571 0.87876 0.91152 0.91064 0.91648 0.91676 0.91193 0.90211 0.75936 0.90803 0.90281 0.87420 0.85110 0.76151 0.94793 0.97402 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.81 71.98 0.63 -1.28 16 2 C 0.14 1.79 1.09 -10.79 -0.01 1.77 16 3 C -0.15 -1.89 8.36 71.98 0.60 -1.29 16 4 O -0.57 -7.47 12.51 -148.98 -1.86 -9.34 16 5 C -0.15 -2.52 4.61 30.60 0.14 -2.38 16 6 C 0.11 2.19 5.86 86.38 0.51 2.70 16 7 N -0.28 -9.05 3.44 -347.73 -1.20 -10.24 16 8 C -0.05 -1.94 11.49 83.49 0.96 -0.98 16 9 C -0.01 -0.41 6.44 41.60 0.27 -0.15 16 10 C 0.10 5.60 5.55 29.10 0.16 5.76 16 11 C -0.53 -31.52 9.09 25.60 0.23 -31.29 16 12 H 0.04 2.71 7.74 -2.91 -0.02 2.69 16 13 C 0.01 0.51 5.46 84.66 0.46 0.98 16 14 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 15 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 N -0.31 -15.33 12.40 -48.60 -0.60 -15.93 16 20 N -0.12 -4.79 12.91 37.02 0.48 -4.31 16 21 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.83 6.34 -2.39 -0.02 0.82 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.39 2.73 9.05 -74.06 -0.67 2.06 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.56 8.12 -2.39 -0.02 1.54 16 30 H 0.11 1.92 6.34 -2.39 -0.02 1.91 16 31 H 0.13 1.96 7.75 -2.39 -0.02 1.94 16 32 H 0.22 5.80 8.06 -2.91 -0.02 5.78 16 33 H 0.03 1.82 8.12 -2.38 -0.02 1.80 16 34 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -74.72 299.00 3.49 -71.23 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: 0.41 Total: 2.53 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.96 Total: -26.14 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -1.04 Total: -86.22 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -1.86 Total: -9.34 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.72 3.49 -71.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603229618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.754 kcal (2) G-P(sol) polarization free energy of solvation -74.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds