Wall clock time and date at job start Sun Mar 29 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47231 * 120.00286 * 2 1 3 5 5 H 1.09002 * 109.46784 * 299.99780 * 4 2 1 6 6 O 1.42892 * 109.47354 * 59.99908 * 4 2 1 7 7 C 1.52998 * 109.46855 * 180.02562 * 4 2 1 8 8 N 1.46505 * 109.46658 * 174.99929 * 7 4 2 9 9 C 1.35310 * 125.86763 * 125.29510 * 8 7 4 10 10 C 1.35348 * 106.17503 * 180.17814 * 9 8 7 11 11 C 1.50700 * 126.75241 * 179.84708 * 10 9 8 12 12 C 1.50702 * 109.46869 * 124.71667 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 N 1.33770 * 106.49624 * 359.59617 * 10 9 8 21 21 N 1.28632 * 108.88455 * 0.25241 * 20 10 9 22 22 H 1.08997 * 109.47151 * 299.99649 * 1 2 3 23 23 H 1.08992 * 109.47253 * 60.00104 * 1 2 3 24 24 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 239.99899 * 2 1 3 26 26 H 1.09002 * 109.47271 * 60.00030 * 3 2 1 27 27 H 1.08990 * 109.47252 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47191 * 300.00413 * 3 2 1 29 29 H 0.96694 * 114.00295 * 60.00045 * 6 4 2 30 30 H 1.09001 * 109.47517 * 54.99863 * 7 4 2 31 31 H 1.08999 * 109.47139 * 294.99516 * 7 4 2 32 32 H 1.08000 * 126.91429 * 0.03609 * 9 8 7 33 33 H 1.09004 * 109.47210 * 4.71960 * 11 10 9 34 34 H 1.08994 * 109.47551 * 244.71612 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 8 1.5638 -2.0685 1.2492 7 6 3.5701 -0.7207 1.2494 8 7 4.0584 -1.3045 2.5013 9 6 4.9203 -2.3420 2.6091 10 6 5.0933 -2.5522 3.9349 11 6 5.9621 -3.6039 4.5753 12 6 6.9326 -2.9455 5.5218 13 1 6.9211 -1.8729 5.6474 14 6 7.8311 -3.7131 6.2322 15 7 7.8449 -5.0193 6.0795 16 14 9.0288 -2.8978 7.4111 17 1 8.8107 -1.4290 7.4012 18 1 8.8071 -3.4215 8.7829 19 1 10.4207 -3.1947 6.9869 20 7 4.3456 -1.6393 4.5650 21 7 3.7451 -0.9154 3.6875 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.8491 -2.5866 0.4842 30 1 3.9331 0.3032 1.1601 31 1 3.9338 -1.3099 0.4076 32 1 5.3765 -2.8930 1.8000 33 1 6.5144 -4.1388 3.8026 34 1 5.3365 -4.3058 5.1266 35 1 8.4773 -5.5593 6.5790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603232349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:00 Heat of formation + Delta-G solvation = 28.252693 kcal Electronic energy + Delta-G solvation = -16841.940652 eV Core-core repulsion = 14069.830090 eV Total energy + Delta-G solvation = -2772.110562 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.46142 -38.79114 -34.55048 -34.21900 -33.01350 -30.98803 -29.13137 -27.42191 -27.12037 -24.34964 -23.32983 -21.17594 -20.89055 -20.00294 -17.17216 -16.64436 -16.45931 -15.99672 -15.16272 -14.66321 -14.45797 -14.40317 -13.96929 -13.22584 -12.81380 -12.60513 -12.52121 -12.22199 -12.03349 -11.76836 -11.63418 -11.31168 -11.06721 -10.89997 -10.69586 -10.63102 -10.37595 -10.00651 -9.64692 -9.33655 -9.18344 -8.39874 -8.06811 -5.95996 -3.96223 2.28944 2.79119 3.37378 3.44091 3.49641 3.58270 4.02962 4.12315 4.43670 4.54080 4.56789 4.59517 4.89209 5.01793 5.17384 5.24426 5.31546 5.40604 5.46433 5.49781 5.58279 5.70506 5.88099 5.94992 5.97838 6.14543 6.37506 7.18623 7.22128 7.37977 7.57421 7.67260 8.02160 8.41338 9.07617 9.37683 9.66435 11.15219 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059042 B = 0.004432 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.121453 B = 6316.386675 C = 6521.473050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.154 4.154 4 C 0.100 3.900 5 H 0.115 0.885 6 O -0.547 6.547 7 C 0.085 3.915 8 N -0.297 5.297 9 C -0.083 4.083 10 C 0.035 3.965 11 C 0.092 3.908 12 C -0.502 4.502 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.285 1.285 20 N -0.261 5.261 21 N -0.107 5.107 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.372 0.628 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.179 0.821 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 8.912 -17.012 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.211 4.211 4 C 0.040 3.960 5 H 0.133 0.867 6 O -0.352 6.352 7 C -0.037 4.037 8 N -0.092 5.092 9 C -0.231 4.231 10 C -0.102 4.102 11 C 0.053 3.947 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.211 1.211 20 N -0.129 5.129 21 N -0.086 5.086 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.218 0.782 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.196 0.804 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.102 9.964 -15.566 22.092 hybrid contribution 1.656 -0.474 -0.772 1.888 sum -10.445 9.490 -16.338 21.589 Atomic orbital electron populations 1.21742 0.93844 1.02588 1.01820 1.21782 0.97597 0.97152 0.97784 1.21930 1.01201 0.95321 1.02695 1.22360 0.90099 0.83868 0.99691 0.86676 1.86729 1.76313 1.22748 1.49390 1.22782 0.96877 1.00994 0.83096 1.46957 1.31443 1.23649 1.07199 1.23304 1.02317 0.97038 1.00444 1.22987 0.98593 0.98913 0.89748 1.17725 0.91773 0.89817 0.95390 1.21103 1.15969 0.93815 1.23154 0.92248 1.24979 0.97624 0.94819 0.97058 1.69961 1.37268 1.04243 1.42374 0.86460 0.80547 0.79752 0.80842 1.19717 1.20943 1.21126 1.75058 1.09000 1.05199 1.23601 1.78120 1.21744 1.22512 0.86245 0.92402 0.92600 0.91850 0.90642 0.91897 0.92200 0.92047 0.78157 0.87929 0.88106 0.80389 0.94620 0.94301 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.05 37.16 0.34 -0.69 16 2 C -0.12 -0.85 2.69 -90.62 -0.24 -1.09 16 3 C -0.15 -0.97 8.85 37.16 0.33 -0.64 16 4 C 0.10 1.00 2.63 -26.73 -0.07 0.93 16 5 H 0.12 1.43 8.00 -51.93 -0.42 1.02 16 6 O -0.55 -6.26 12.61 -35.23 -0.44 -6.70 16 7 C 0.09 0.90 5.88 -4.04 -0.02 0.87 16 8 N -0.30 -5.02 3.39 -61.26 -0.21 -5.23 16 9 C -0.08 -1.54 11.49 -17.05 -0.20 -1.74 16 10 C 0.03 0.83 6.44 -82.78 -0.53 0.29 16 11 C 0.09 2.46 5.55 -29.03 -0.16 2.30 16 12 C -0.50 -14.75 9.09 -34.44 -0.31 -15.07 16 13 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 17 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 N -0.26 -6.47 12.40 33.29 0.41 -6.06 16 21 N -0.11 -2.26 12.82 60.35 0.77 -1.49 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.35 6.32 -51.93 -0.33 0.02 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.37 2.70 9.05 45.56 0.41 3.11 16 30 H 0.10 0.94 6.17 -51.93 -0.32 0.62 16 31 H 0.10 0.74 8.07 -51.93 -0.42 0.33 16 32 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 33 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -35.26 298.86 -4.61 -39.87 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.39 Total: -2.69 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.97 Total: -13.30 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 1.72 Total: -39.04 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.44 Total: -6.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.26 -4.61 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.127 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds