Wall clock time and date at job start Sun Mar 29 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47054 * 2 1 4 4 C 1.53001 * 109.47231 * 120.00286 * 2 1 3 5 5 H 1.09002 * 109.46784 * 299.99780 * 4 2 1 6 6 O 1.42892 * 109.47354 * 59.99908 * 4 2 1 7 7 C 1.52998 * 109.46855 * 180.02562 * 4 2 1 8 8 N 1.46505 * 109.46658 * 174.99929 * 7 4 2 9 9 C 1.35310 * 125.86763 * 125.29510 * 8 7 4 10 10 C 1.35348 * 106.17503 * 180.17814 * 9 8 7 11 11 C 1.50700 * 126.75241 * 179.84708 * 10 9 8 12 12 C 1.50702 * 109.46869 * 124.71667 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 N 1.33770 * 106.49624 * 359.59617 * 10 9 8 21 21 N 1.28632 * 108.88455 * 0.25241 * 20 10 9 22 22 H 1.08997 * 109.47151 * 299.99649 * 1 2 3 23 23 H 1.08992 * 109.47253 * 60.00104 * 1 2 3 24 24 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47057 * 239.99899 * 2 1 3 26 26 H 1.09002 * 109.47271 * 60.00030 * 3 2 1 27 27 H 1.08990 * 109.47252 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47191 * 300.00413 * 3 2 1 29 29 H 0.96694 * 114.00295 * 60.00045 * 6 4 2 30 30 H 1.09001 * 109.47517 * 54.99863 * 7 4 2 31 31 H 1.08999 * 109.47139 * 294.99516 * 7 4 2 32 32 H 1.08000 * 126.91429 * 0.03609 * 9 8 7 33 33 H 1.09004 * 109.47210 * 4.71960 * 11 10 9 34 34 H 1.08994 * 109.47551 * 244.71612 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 8 1.5638 -2.0685 1.2492 7 6 3.5701 -0.7207 1.2494 8 7 4.0584 -1.3045 2.5013 9 6 4.9203 -2.3420 2.6091 10 6 5.0933 -2.5522 3.9349 11 6 5.9621 -3.6039 4.5753 12 6 6.9326 -2.9455 5.5218 13 1 6.9211 -1.8729 5.6474 14 6 7.8311 -3.7131 6.2322 15 7 7.8449 -5.0193 6.0795 16 14 9.0288 -2.8978 7.4111 17 1 8.8107 -1.4290 7.4012 18 1 8.8071 -3.4215 8.7829 19 1 10.4207 -3.1947 6.9869 20 7 4.3456 -1.6393 4.5650 21 7 3.7451 -0.9154 3.6875 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.8491 -2.5866 0.4842 30 1 3.9331 0.3032 1.1601 31 1 3.9338 -1.3099 0.4076 32 1 5.3765 -2.8930 1.8000 33 1 6.5144 -4.1388 3.8026 34 1 5.3365 -4.3058 5.1266 35 1 8.4773 -5.5593 6.5790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603232349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:00 Heat of formation + Delta-G solvation = 1.399817 kcal Electronic energy + Delta-G solvation = -16843.105080 eV Core-core repulsion = 14069.830090 eV Total energy + Delta-G solvation = -2773.274990 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.01468 -39.58516 -35.88580 -35.23418 -34.82824 -32.84602 -30.26603 -29.14387 -27.81087 -25.55604 -25.17905 -22.64690 -21.79037 -21.32723 -18.58624 -18.21235 -17.53180 -17.38454 -16.55377 -16.10130 -15.62949 -15.50753 -15.02876 -14.51265 -14.30223 -13.85161 -13.66068 -13.32862 -13.15217 -12.94142 -12.79386 -12.64380 -12.53275 -12.32818 -11.88699 -11.85917 -11.74238 -11.64978 -11.36117 -11.19245 -10.59846 -10.52823 -9.81990 -8.18562 -6.27274 0.80591 1.39767 1.41685 1.54548 1.59886 1.80108 2.44965 3.14020 3.31227 3.33530 3.66808 3.82265 3.86777 4.00148 4.28242 4.31549 4.34392 4.50300 4.59393 4.68804 4.80540 4.91140 4.99075 5.03053 5.19446 5.30980 5.40255 5.42727 5.47238 5.55131 5.77337 5.87567 6.23343 6.77871 6.81223 7.39416 7.75042 8.92650 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.059042 B = 0.004432 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.121453 B = 6316.386675 C = 6521.473050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.156 4.156 4 C 0.105 3.895 5 H 0.082 0.918 6 O -0.573 6.573 7 C 0.071 3.929 8 N -0.276 5.276 9 C -0.051 4.051 10 C -0.011 4.011 11 C 0.102 3.898 12 C -0.523 4.523 13 H 0.043 0.957 14 C 0.008 3.992 15 N -0.927 5.927 16 Si 0.963 3.037 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.269 1.269 20 N -0.313 5.313 21 N -0.121 5.121 22 H 0.042 0.958 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.390 0.610 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.225 0.775 33 H 0.035 0.965 34 H 0.005 0.995 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 9.773 -19.462 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.213 4.213 4 C 0.045 3.955 5 H 0.100 0.900 6 O -0.381 6.381 7 C -0.049 4.049 8 N -0.071 5.071 9 C -0.202 4.202 10 C -0.149 4.149 11 C 0.064 3.936 12 C -0.562 4.562 13 H 0.062 0.938 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.788 3.212 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.194 1.194 20 N -0.180 5.180 21 N -0.100 5.100 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.240 0.760 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.242 0.758 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.567 10.847 -18.045 24.023 hybrid contribution 1.383 -0.723 -0.140 1.567 sum -10.184 10.124 -18.185 23.171 Atomic orbital electron populations 1.21753 0.94348 1.02107 1.01908 1.21698 0.97041 0.97307 0.96921 1.21960 1.01732 0.94846 1.02773 1.22264 0.89586 0.83597 1.00089 0.89983 1.86695 1.76809 1.23627 1.50976 1.23474 0.97269 1.02755 0.81358 1.47413 1.29495 1.22265 1.07951 1.23733 1.00653 0.96275 0.99499 1.22670 1.00456 0.99749 0.92068 1.17380 0.91338 0.90141 0.94783 1.21317 1.17153 0.93245 1.24465 0.93820 1.25808 0.99259 0.95422 0.98553 1.70052 1.38069 1.05423 1.43204 0.85425 0.78701 0.78436 0.78615 1.19905 1.20257 1.19433 1.74962 1.10580 1.06564 1.25867 1.77992 1.21962 1.22519 0.87522 0.93874 0.90983 0.92619 0.87875 0.93224 0.91335 0.90670 0.76004 0.85909 0.83534 0.75841 0.94685 0.97693 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 71.98 0.65 -1.16 16 2 C -0.11 -1.17 2.69 -10.79 -0.03 -1.20 16 3 C -0.16 -1.50 8.85 71.98 0.64 -0.87 16 4 C 0.10 1.87 2.63 30.59 0.08 1.95 16 5 H 0.08 2.03 8.00 -2.39 -0.02 2.01 16 6 O -0.57 -12.00 12.61 -148.98 -1.88 -13.88 16 7 C 0.07 1.23 5.88 86.38 0.51 1.74 16 8 N -0.28 -8.78 3.39 -347.73 -1.18 -9.96 16 9 C -0.05 -1.81 11.49 83.49 0.96 -0.85 16 10 C -0.01 -0.53 6.44 41.60 0.27 -0.26 16 11 C 0.10 5.67 5.55 29.10 0.16 5.84 16 12 C -0.52 -31.61 9.09 25.60 0.23 -31.38 16 13 H 0.04 2.71 7.74 -2.91 -0.02 2.69 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 16 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 17 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 N -0.31 -15.95 12.40 -48.60 -0.60 -16.55 16 21 N -0.12 -5.11 12.82 37.02 0.47 -4.63 16 22 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.79 7.68 -2.39 -0.02 0.77 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.55 6.32 -2.39 -0.02 0.53 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.39 4.44 9.05 -74.06 -0.67 3.77 16 30 H 0.12 1.76 6.17 -2.39 -0.01 1.74 16 31 H 0.15 1.29 8.07 -2.39 -0.02 1.27 16 32 H 0.23 5.61 8.06 -2.91 -0.02 5.58 16 33 H 0.03 1.89 8.12 -2.38 -0.02 1.87 16 34 H 0.00 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -79.85 298.86 3.47 -76.38 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.41 Total: 1.69 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.93 Total: -25.27 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.02 Total: -87.18 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -1.88 Total: -13.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.85 3.47 -76.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.784 kcal (2) G-P(sol) polarization free energy of solvation -79.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds