Wall clock time and date at job start Sun Mar 29 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99672 * 2 1 4 4 C 1.53006 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 3 7 7 C 1.53002 * 109.47233 * 65.00509 * 5 4 3 8 8 N 1.46499 * 109.46840 * 185.00008 * 5 4 3 9 9 C 1.35307 * 125.87199 * 275.00306 * 8 5 4 10 10 C 1.35347 * 106.18010 * 180.02562 * 9 8 5 11 11 C 1.50701 * 126.75807 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47243 * 124.99804 * 11 10 9 13 13 H 1.07994 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99662 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99446 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00369 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47057 * 90.00368 * 16 14 12 18 18 H 1.48504 * 109.46896 * 210.00401 * 16 14 12 19 19 H 1.48499 * 109.46970 * 329.99982 * 16 14 12 20 20 N 1.33777 * 106.49746 * 0.02562 * 10 9 8 21 21 N 1.28643 * 108.87842 * 359.73444 * 20 10 9 22 22 H 1.08999 * 109.47529 * 60.00109 * 1 2 3 23 23 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47231 * 300.00312 * 1 2 3 25 25 H 1.09002 * 109.47269 * 60.00199 * 3 2 1 26 26 H 1.09001 * 109.47412 * 299.99925 * 3 2 1 27 27 H 1.09002 * 109.46824 * 60.00164 * 4 3 2 28 28 H 1.08991 * 109.47210 * 300.00249 * 4 3 2 29 29 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 30 30 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 31 31 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 32 32 H 1.08003 * 126.91299 * 359.97323 * 9 8 5 33 33 H 1.08997 * 109.47357 * 245.00407 * 11 10 9 34 34 H 1.09004 * 109.46892 * 5.00089 * 11 10 9 35 35 H 0.97001 * 119.99687 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 1 3.7672 3.1537 -0.8423 7 6 3.8077 3.2971 1.3068 8 7 5.6133 2.4689 -0.1198 9 6 6.4800 2.2741 0.9008 10 6 7.7135 2.2313 0.3452 11 6 9.0213 2.0324 1.0670 12 6 9.7552 0.8626 0.4636 13 1 9.3185 0.3180 -0.3604 14 6 10.9842 0.4877 0.9637 15 7 11.6250 -0.5328 0.4367 16 14 11.7399 1.4302 2.3885 17 1 11.3092 0.8179 3.6709 18 1 13.2206 1.3771 2.2872 19 1 11.2909 2.8448 2.3398 20 7 7.5433 2.4004 -0.9709 21 7 6.2872 2.5331 -1.2145 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8465 -0.8900 27 1 3.8574 0.6437 -0.8892 28 1 3.8567 0.6440 0.8908 29 1 2.7247 3.3816 1.3960 30 1 4.1981 2.7259 2.1491 31 1 4.2506 4.2931 1.3062 32 1 6.2367 2.1739 1.9483 33 1 9.6297 2.9317 0.9712 34 1 8.8280 1.8352 2.1215 35 1 12.4898 -0.7964 0.7882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603233959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:33 Heat of formation + Delta-G solvation = 43.823732 kcal Electronic energy + Delta-G solvation = -16666.560706 eV Core-core repulsion = 13895.125355 eV Total energy + Delta-G solvation = -2771.435351 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.61744 -38.50230 -36.44562 -33.46475 -31.85506 -31.18367 -29.16176 -28.08986 -26.70065 -24.79012 -23.08219 -22.38157 -20.43193 -20.02349 -17.28708 -16.70309 -16.53064 -16.27526 -15.70664 -15.05227 -14.70049 -14.32150 -13.98424 -13.42654 -13.23566 -13.11235 -12.30633 -12.29879 -12.17219 -11.96437 -11.71896 -11.40409 -11.33978 -11.05122 -10.61219 -10.51893 -10.08622 -10.01136 -9.82409 -9.39376 -9.28778 -8.50909 -8.23208 -5.96745 -3.94617 2.15790 2.64045 3.33526 3.40773 3.42008 3.44506 3.47158 4.25293 4.49000 4.59485 4.62074 4.70617 4.81676 4.97476 5.00306 5.03393 5.10044 5.30667 5.32110 5.34043 5.39735 5.54722 5.68306 5.77229 5.87294 5.98942 6.27464 6.78610 6.89249 7.12354 7.15016 7.24697 7.76307 8.61132 9.11644 9.27357 9.62294 11.16853 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036397 B = 0.004591 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.118318 B = 6097.279285 C = 6278.601312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.109 0.891 7 C -0.167 4.167 8 N -0.298 5.298 9 C -0.077 4.077 10 C 0.038 3.962 11 C 0.060 3.940 12 C -0.506 4.506 13 H 0.076 0.924 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.264 1.264 20 N -0.255 5.255 21 N -0.107 5.107 22 H 0.042 0.958 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.180 0.820 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.719 6.781 4.060 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.172 4.172 5 C 0.049 3.951 6 H 0.127 0.873 7 C -0.225 4.225 8 N -0.094 5.094 9 C -0.226 4.226 10 C -0.100 4.100 11 C 0.021 3.979 12 C -0.544 4.544 13 H 0.094 0.906 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 N -0.121 5.121 21 N -0.085 5.085 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.197 0.803 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.518 6.703 2.530 23.630 hybrid contribution 0.152 0.364 1.909 1.949 sum -22.366 7.067 4.439 23.872 Atomic orbital electron populations 1.22757 0.80786 1.02968 0.99971 1.87909 1.19847 1.27634 1.95414 1.22475 0.92925 0.85084 1.00592 1.21901 0.93770 0.96017 1.05500 1.21287 0.75247 0.97376 1.01198 0.87276 1.22263 1.02951 1.01423 0.95873 1.47251 1.07849 1.48368 1.05935 1.23209 0.90018 1.13317 0.96019 1.22483 0.96500 1.00637 0.90338 1.18142 0.87253 0.98514 0.94022 1.20928 1.03011 1.12296 1.18213 0.90576 1.24981 0.96695 0.94897 0.96806 1.69910 1.15058 1.27017 1.42013 0.86824 0.78630 0.81159 0.82986 1.20244 1.21254 1.18899 1.75097 1.05587 1.15812 1.15653 1.78232 0.99810 1.20753 1.09667 0.93978 0.89480 0.94017 0.92642 0.92831 0.89645 0.89742 0.89905 0.90794 0.91018 0.80272 0.94484 0.95174 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.06 10.70 -35.23 -0.38 -4.44 16 3 C 0.07 0.55 5.69 37.16 0.21 0.76 16 4 C -0.13 -1.42 5.38 -26.73 -0.14 -1.57 16 5 C 0.15 1.63 3.32 -67.93 -0.23 1.41 16 6 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 7 C -0.17 -1.29 8.59 37.16 0.32 -0.97 16 8 N -0.30 -4.91 3.25 -54.76 -0.18 -5.09 16 9 C -0.08 -1.36 10.61 -17.05 -0.18 -1.54 16 10 C 0.04 0.86 6.44 -82.78 -0.53 0.33 16 11 C 0.06 1.47 4.62 -29.03 -0.13 1.34 16 12 C -0.51 -15.02 9.64 -34.44 -0.33 -15.35 16 13 H 0.08 2.53 7.98 -52.49 -0.42 2.11 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 20 N -0.25 -6.16 12.40 33.29 0.41 -5.75 16 21 N -0.11 -2.20 13.17 60.35 0.79 -1.41 16 22 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.42 6.57 -51.93 -0.34 0.08 16 30 H 0.07 0.57 7.17 -51.93 -0.37 0.20 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.18 2.47 7.30 -52.48 -0.38 2.09 16 33 H 0.04 0.92 7.20 -51.93 -0.37 0.55 16 34 H 0.03 0.68 7.55 -51.93 -0.39 0.29 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -35.67 296.25 -3.95 -39.62 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.17 Total: -4.25 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 0.00 Total: -12.37 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 1.80 Total: -39.89 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.38 Total: -4.44 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.67 -3.95 -39.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603233959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.444 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds