Wall clock time and date at job start Sun Mar 29 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99672 * 2 1 4 4 C 1.53006 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47398 * 305.00335 * 5 4 3 7 7 C 1.53002 * 109.47233 * 65.00509 * 5 4 3 8 8 N 1.46499 * 109.46840 * 185.00008 * 5 4 3 9 9 C 1.35307 * 125.87199 * 275.00306 * 8 5 4 10 10 C 1.35347 * 106.18010 * 180.02562 * 9 8 5 11 11 C 1.50701 * 126.75807 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47243 * 124.99804 * 11 10 9 13 13 H 1.07994 * 119.99663 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99662 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99446 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 120.00369 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47057 * 90.00368 * 16 14 12 18 18 H 1.48504 * 109.46896 * 210.00401 * 16 14 12 19 19 H 1.48499 * 109.46970 * 329.99982 * 16 14 12 20 20 N 1.33777 * 106.49746 * 0.02562 * 10 9 8 21 21 N 1.28643 * 108.87842 * 359.73444 * 20 10 9 22 22 H 1.08999 * 109.47529 * 60.00109 * 1 2 3 23 23 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47231 * 300.00312 * 1 2 3 25 25 H 1.09002 * 109.47269 * 60.00199 * 3 2 1 26 26 H 1.09001 * 109.47412 * 299.99925 * 3 2 1 27 27 H 1.09002 * 109.46824 * 60.00164 * 4 3 2 28 28 H 1.08991 * 109.47210 * 300.00249 * 4 3 2 29 29 H 1.09000 * 109.46986 * 299.99797 * 7 5 4 30 30 H 1.09002 * 109.47075 * 59.99068 * 7 5 4 31 31 H 1.08996 * 109.47407 * 180.02562 * 7 5 4 32 32 H 1.08003 * 126.91299 * 359.97323 * 9 8 5 33 33 H 1.08997 * 109.47357 * 245.00407 * 11 10 9 34 34 H 1.09004 * 109.46892 * 5.00089 * 11 10 9 35 35 H 0.97001 * 119.99687 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5825 0.0000 6 1 3.7672 3.1537 -0.8423 7 6 3.8077 3.2971 1.3068 8 7 5.6133 2.4689 -0.1198 9 6 6.4800 2.2741 0.9008 10 6 7.7135 2.2313 0.3452 11 6 9.0213 2.0324 1.0670 12 6 9.7552 0.8626 0.4636 13 1 9.3185 0.3180 -0.3604 14 6 10.9842 0.4877 0.9637 15 7 11.6250 -0.5328 0.4367 16 14 11.7399 1.4302 2.3885 17 1 11.3092 0.8179 3.6709 18 1 13.2206 1.3771 2.2872 19 1 11.2909 2.8448 2.3398 20 7 7.5433 2.4004 -0.9709 21 7 6.2872 2.5331 -1.2145 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6885 1.8464 0.8900 26 1 1.6885 1.8465 -0.8900 27 1 3.8574 0.6437 -0.8892 28 1 3.8567 0.6440 0.8908 29 1 2.7247 3.3816 1.3960 30 1 4.1981 2.7259 2.1491 31 1 4.2506 4.2931 1.3062 32 1 6.2367 2.1739 1.9483 33 1 9.6297 2.9317 0.9712 34 1 8.8280 1.8352 2.1215 35 1 12.4898 -0.7964 0.7882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603233959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:33 Heat of formation + Delta-G solvation = 16.790263 kcal Electronic energy + Delta-G solvation = -16667.732965 eV Core-core repulsion = 13895.125355 eV Total energy + Delta-G solvation = -2772.607610 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.11512 -39.21897 -37.43355 -35.44283 -33.52078 -32.71147 -29.97996 -29.88126 -27.28852 -25.72895 -25.06717 -23.46267 -21.99102 -21.25752 -18.89293 -18.34044 -17.41549 -17.07194 -16.89138 -16.30412 -15.89013 -15.51034 -15.40362 -14.96489 -14.28170 -14.14704 -13.93472 -13.82694 -13.01105 -12.86202 -12.73964 -12.51902 -12.38372 -12.36701 -12.07594 -12.02532 -11.88253 -11.62781 -11.42396 -10.87849 -10.72993 -10.60968 -9.88332 -8.23764 -6.29462 0.73275 1.41474 1.46199 1.50128 1.58076 1.74353 2.41968 2.77594 3.10282 3.40978 3.66944 3.83477 3.88116 4.04919 4.13432 4.24281 4.37518 4.39239 4.53551 4.54947 4.64325 4.73453 4.78491 4.85381 4.87893 4.99058 5.06560 5.21600 5.34125 5.37939 5.63096 5.84763 6.22492 6.32831 6.75825 7.32288 7.69972 8.94288 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.036397 B = 0.004591 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.118318 B = 6097.279285 C = 6278.601312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.069 3.931 4 C -0.128 4.128 5 C 0.141 3.859 6 H 0.124 0.876 7 C -0.162 4.162 8 N -0.280 5.280 9 C -0.044 4.044 10 C -0.009 4.009 11 C 0.067 3.933 12 C -0.520 4.520 13 H 0.015 0.985 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.962 3.038 17 H -0.255 1.255 18 H -0.287 1.287 19 H -0.241 1.241 20 N -0.312 5.312 21 N -0.126 5.126 22 H 0.052 0.948 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.023 8.780 7.067 27.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.007 4.007 4 C -0.167 4.167 5 C 0.041 3.959 6 H 0.142 0.858 7 C -0.220 4.220 8 N -0.076 5.076 9 C -0.195 4.195 10 C -0.147 4.147 11 C 0.028 3.972 12 C -0.559 4.559 13 H 0.034 0.966 14 C -0.195 4.195 15 N -0.597 5.597 16 Si 0.783 3.217 17 H -0.179 1.179 18 H -0.213 1.213 19 H -0.164 1.164 20 N -0.178 5.178 21 N -0.104 5.104 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.244 0.756 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.886 8.717 5.507 26.937 hybrid contribution 0.691 -0.341 0.876 1.167 sum -24.194 8.376 6.383 26.387 Atomic orbital electron populations 1.22937 0.79000 1.03752 1.01305 1.87856 1.21903 1.28953 1.95721 1.22523 0.90684 0.84823 1.02704 1.21825 0.96018 0.95332 1.03510 1.21880 0.71722 0.98124 1.04138 0.85839 1.22326 1.05337 1.00786 0.93521 1.47765 1.09867 1.45359 1.04609 1.23676 0.88287 1.09657 0.97852 1.22443 0.97724 1.04088 0.90484 1.17974 0.87937 0.95932 0.95345 1.21141 1.03964 1.13763 1.16989 0.96644 1.26121 0.96995 0.95900 1.00528 1.70103 1.15808 1.29363 1.44419 0.85502 0.77086 0.80448 0.78633 1.17913 1.21302 1.16390 1.75009 1.07601 1.17930 1.17236 1.78095 0.99103 1.21929 1.11304 0.92978 0.89165 0.92265 0.89586 0.91505 0.93041 0.90395 0.86372 0.90187 0.90943 0.75620 0.94652 0.92124 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -8.08 10.70 -148.98 -1.59 -9.67 16 3 C 0.07 0.95 5.69 71.98 0.41 1.36 16 4 C -0.13 -2.52 5.38 30.60 0.16 -2.36 16 5 C 0.14 2.67 3.32 44.99 0.15 2.82 16 6 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 7 C -0.16 -1.73 8.59 71.98 0.62 -1.11 16 8 N -0.28 -8.85 3.25 -327.17 -1.06 -9.92 16 9 C -0.04 -1.48 10.61 83.49 0.89 -0.59 16 10 C -0.01 -0.40 6.44 41.59 0.27 -0.13 16 11 C 0.07 3.29 4.62 29.10 0.13 3.42 16 12 C -0.52 -32.06 9.64 25.60 0.25 -31.81 16 13 H 0.02 1.09 7.98 -2.91 -0.02 1.06 16 14 C 0.00 0.03 5.47 84.65 0.46 0.49 16 15 N -0.96 -62.59 13.96 21.45 0.30 -62.29 16 16 Si 0.96 44.08 27.47 68.60 1.88 45.96 16 17 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 20 N -0.31 -15.66 12.40 -48.60 -0.60 -16.26 16 21 N -0.13 -5.31 13.17 37.02 0.49 -4.82 16 22 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.09 0.66 6.57 -2.39 -0.02 0.64 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.12 0.49 6.57 -2.39 -0.02 0.47 16 30 H 0.08 0.81 7.17 -2.39 -0.02 0.79 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.23 5.17 7.30 -2.91 -0.02 5.15 16 33 H 0.04 1.72 7.20 -2.39 -0.02 1.71 16 34 H 0.06 2.58 7.55 -2.38 -0.02 2.56 16 35 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -84.26 296.25 5.01 -79.25 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.01 Total: 4.13 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.59 Total: -26.38 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -0.88 Total: -93.29 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -1.59 Total: -9.67 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -84.26 5.01 -79.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603233959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.043 kcal (2) G-P(sol) polarization free energy of solvation -84.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds