Wall clock time and date at job start Sun Mar 29 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.53002 * 109.47278 * 295.00291 * 5 4 3 8 8 N 1.46505 * 109.47578 * 174.99814 * 5 4 3 9 9 C 1.35316 * 125.86297 * 84.71544 * 8 5 4 10 10 C 1.35352 * 106.17004 * 179.90500 * 9 8 5 11 11 C 1.50697 * 126.75051 * 180.12143 * 10 9 8 12 12 C 1.50699 * 109.47162 * 125.30085 * 11 10 9 13 13 H 1.08004 * 119.99893 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00355 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00239 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00005 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47238 * 89.99811 * 16 14 12 18 18 H 1.48497 * 109.47390 * 210.00122 * 16 14 12 19 19 H 1.48503 * 109.46736 * 329.99913 * 16 14 12 20 20 N 1.33775 * 106.49695 * 0.35568 * 10 9 8 21 21 N 1.28631 * 108.88685 * 359.77008 * 20 10 9 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 1.09000 * 109.46593 * 299.99796 * 7 5 4 30 30 H 1.08998 * 109.46891 * 59.99794 * 7 5 4 31 31 H 1.09004 * 109.47334 * 179.97438 * 7 5 4 32 32 H 1.08000 * 126.91506 * 0.02562 * 9 8 5 33 33 H 1.08998 * 109.47465 * 245.29993 * 11 10 9 34 34 H 1.09004 * 109.47092 * 5.29911 * 11 10 9 35 35 H 0.97008 * 119.99856 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 0.8424 7 6 3.8079 3.2970 -1.3067 8 7 5.6136 2.4686 0.1198 9 6 6.4797 2.2685 -0.9003 10 6 7.7135 2.2295 -0.3451 11 6 9.0212 2.0302 -1.0670 12 6 9.9577 3.1624 -0.7319 13 1 9.6376 3.9480 -0.0634 14 6 11.2225 3.1960 -1.2795 15 7 12.0395 4.1843 -0.9874 16 14 11.7759 1.8376 -2.4363 17 1 11.4312 2.2059 -3.8330 18 1 13.2452 1.6566 -2.3204 19 1 11.0910 0.5704 -2.0752 20 7 7.5433 2.3975 0.9711 21 7 6.2878 2.5365 1.2141 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 4.1982 2.7258 -2.1490 30 1 2.7248 3.3816 -1.3958 31 1 4.2509 4.2930 -1.3061 32 1 6.2359 2.1632 -1.9472 33 1 9.4675 1.0856 -0.7563 34 1 8.8436 2.0118 -2.1423 35 1 12.9296 4.2077 -1.3725 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603233961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:35 Heat of formation + Delta-G solvation = 43.585803 kcal Electronic energy + Delta-G solvation = -16634.129252 eV Core-core repulsion = 13862.683584 eV Total energy + Delta-G solvation = -2771.445668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.61889 -38.54280 -36.45907 -33.47042 -31.86852 -31.19026 -29.16548 -28.09233 -26.73578 -24.80514 -23.08298 -22.40544 -20.43238 -20.03309 -17.30704 -16.71386 -16.55598 -16.30375 -15.70107 -15.10841 -14.71468 -14.34340 -13.93144 -13.45881 -13.25464 -13.14677 -12.30494 -12.25459 -12.09847 -12.05585 -11.78761 -11.39955 -11.36910 -11.06025 -10.61544 -10.52918 -10.08405 -10.05590 -9.82378 -9.39447 -9.29490 -8.51579 -8.23344 -5.97528 -3.95386 2.16231 2.62103 3.33281 3.40670 3.42294 3.42924 3.45516 4.24785 4.48617 4.57581 4.60633 4.68055 4.80374 4.94961 4.97258 5.00460 5.09602 5.28084 5.31331 5.34042 5.41086 5.51626 5.69685 5.76021 5.82981 5.98825 6.27252 6.73518 6.89174 7.12453 7.14926 7.24595 7.75788 8.60367 9.10615 9.27328 9.61686 11.16032 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048202 B = 0.004357 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.745807 B = 6425.162088 C = 6606.641013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.131 4.131 5 C 0.151 3.849 6 H 0.110 0.890 7 C -0.168 4.168 8 N -0.298 5.298 9 C -0.077 4.077 10 C 0.038 3.962 11 C 0.059 3.941 12 C -0.506 4.506 13 H 0.076 0.924 14 C 0.067 3.933 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.264 1.264 20 N -0.255 5.255 21 N -0.106 5.106 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.180 0.820 33 H 0.038 0.962 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.825 -5.715 -2.597 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.170 4.170 5 C 0.048 3.952 6 H 0.128 0.872 7 C -0.226 4.226 8 N -0.094 5.094 9 C -0.226 4.226 10 C -0.099 4.099 11 C 0.020 3.980 12 C -0.544 4.544 13 H 0.094 0.906 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.189 1.189 20 N -0.121 5.121 21 N -0.084 5.084 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.197 0.803 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.609 -5.615 -1.089 24.292 hybrid contribution 0.080 -0.446 -1.815 1.870 sum -23.529 -6.061 -2.904 24.470 Atomic orbital electron populations 1.22759 0.80737 1.02938 1.00053 1.87889 1.19896 1.27708 1.95441 1.22481 0.92897 0.85045 1.00738 1.21883 0.93822 0.96067 1.05214 1.21291 0.75242 0.97268 1.01354 0.87237 1.22270 1.02896 1.01692 0.95734 1.47250 1.07844 1.48288 1.06021 1.23213 0.90002 1.13366 0.95982 1.22480 0.96169 1.00934 0.90359 1.18144 0.87373 0.98761 0.93684 1.20926 0.97171 1.07579 1.28749 0.90586 1.24978 0.96368 0.95647 0.96383 1.69908 1.07775 1.31639 1.44726 0.86827 0.78065 0.83296 0.81436 1.20244 1.21246 1.18873 1.75092 1.05485 1.15655 1.15918 1.78231 0.99821 1.20683 1.09715 0.93970 0.89505 0.93939 0.92551 0.92762 0.89775 0.89881 0.90840 0.89934 0.90803 0.80270 0.94454 0.95165 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.78 10.70 -35.23 -0.38 -4.16 16 3 C 0.07 0.51 5.69 37.16 0.21 0.72 16 4 C -0.13 -1.30 5.38 -26.74 -0.14 -1.44 16 5 C 0.15 1.63 3.32 -67.93 -0.23 1.40 16 6 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 7 C -0.17 -1.37 8.59 37.16 0.32 -1.05 16 8 N -0.30 -4.91 3.25 -54.76 -0.18 -5.09 16 9 C -0.08 -1.36 10.61 -17.04 -0.18 -1.54 16 10 C 0.04 0.86 6.44 -82.78 -0.53 0.33 16 11 C 0.06 1.47 4.62 -29.04 -0.13 1.33 16 12 C -0.51 -14.95 9.64 -34.44 -0.33 -15.29 16 13 H 0.08 2.51 7.98 -52.48 -0.42 2.09 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -28.35 13.96 55.43 0.77 -27.57 16 16 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 20 N -0.25 -6.16 12.40 33.29 0.41 -5.75 16 21 N -0.11 -2.20 13.16 60.35 0.79 -1.40 16 22 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.59 7.18 -51.93 -0.37 0.21 16 30 H 0.08 0.44 6.57 -51.93 -0.34 0.10 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.18 2.47 7.31 -52.49 -0.38 2.08 16 33 H 0.04 0.93 7.20 -51.93 -0.37 0.56 16 34 H 0.03 0.68 7.55 -51.93 -0.39 0.29 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 296.27 15.07 4.46 4.46 Total: -1.00 -35.48 296.27 -3.95 -39.44 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.17 Total: -4.44 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 0.00 Total: -12.34 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 1.80 Total: -39.81 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.38 Total: -4.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.48 -3.95 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603233961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.022 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds