Wall clock time and date at job start Sun Mar 29 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46906 * 55.00224 * 5 4 3 7 7 C 1.53002 * 109.47278 * 295.00291 * 5 4 3 8 8 N 1.46505 * 109.47578 * 174.99814 * 5 4 3 9 9 C 1.35316 * 125.86297 * 84.71544 * 8 5 4 10 10 C 1.35352 * 106.17004 * 179.90500 * 9 8 5 11 11 C 1.50697 * 126.75051 * 180.12143 * 10 9 8 12 12 C 1.50699 * 109.47162 * 125.30085 * 11 10 9 13 13 H 1.08004 * 119.99893 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00355 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00239 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00005 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47238 * 89.99811 * 16 14 12 18 18 H 1.48497 * 109.47390 * 210.00122 * 16 14 12 19 19 H 1.48503 * 109.46736 * 329.99913 * 16 14 12 20 20 N 1.33775 * 106.49695 * 0.35568 * 10 9 8 21 21 N 1.28631 * 108.88685 * 359.77008 * 20 10 9 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 1.09000 * 109.46593 * 299.99796 * 7 5 4 30 30 H 1.08998 * 109.46891 * 59.99794 * 7 5 4 31 31 H 1.09004 * 109.47334 * 179.97438 * 7 5 4 32 32 H 1.08000 * 126.91506 * 0.02562 * 9 8 5 33 33 H 1.08998 * 109.47465 * 245.29993 * 11 10 9 34 34 H 1.09004 * 109.47092 * 5.29911 * 11 10 9 35 35 H 0.97008 * 119.99856 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 1 3.7675 3.1534 0.8424 7 6 3.8079 3.2970 -1.3067 8 7 5.6136 2.4686 0.1198 9 6 6.4797 2.2685 -0.9003 10 6 7.7135 2.2295 -0.3451 11 6 9.0212 2.0302 -1.0670 12 6 9.9577 3.1624 -0.7319 13 1 9.6376 3.9480 -0.0634 14 6 11.2225 3.1960 -1.2795 15 7 12.0395 4.1843 -0.9874 16 14 11.7759 1.8376 -2.4363 17 1 11.4312 2.2059 -3.8330 18 1 13.2452 1.6566 -2.3204 19 1 11.0910 0.5704 -2.0752 20 7 7.5433 2.3975 0.9711 21 7 6.2878 2.5365 1.2141 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 4.1982 2.7258 -2.1490 30 1 2.7248 3.3816 -1.3958 31 1 4.2509 4.2930 -1.3061 32 1 6.2359 2.1632 -1.9472 33 1 9.4675 1.0856 -0.7563 34 1 8.8436 2.0118 -2.1423 35 1 12.9296 4.2077 -1.3725 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603233961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:35 Heat of formation + Delta-G solvation = 16.887154 kcal Electronic energy + Delta-G solvation = -16635.286993 eV Core-core repulsion = 13862.683584 eV Total energy + Delta-G solvation = -2772.603409 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.11627 -39.20887 -37.43048 -35.44274 -33.51923 -32.70676 -29.97762 -29.88507 -27.28318 -25.73065 -25.06224 -23.45489 -21.99010 -21.25664 -18.89476 -18.33522 -17.41854 -17.06541 -16.83722 -16.31574 -15.94886 -15.47487 -15.37325 -14.95456 -14.35589 -14.15025 -13.99387 -13.69348 -13.04372 -12.86997 -12.72327 -12.58123 -12.37361 -12.32427 -12.06548 -12.03268 -11.88441 -11.62459 -11.42358 -10.87724 -10.72861 -10.60062 -9.88363 -8.23755 -6.29174 0.73876 1.41436 1.45940 1.49008 1.57897 1.74484 2.41852 2.78094 3.10333 3.40236 3.66974 3.83506 3.88491 4.05894 4.14848 4.24407 4.37651 4.40651 4.54776 4.55747 4.63794 4.72317 4.77566 4.86614 4.88879 4.99109 5.06721 5.20757 5.34168 5.37590 5.63081 5.84571 6.22175 6.33035 6.75995 7.32615 7.70020 8.94145 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.048202 B = 0.004357 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.745807 B = 6425.162088 C = 6606.641013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.068 3.932 4 C -0.123 4.123 5 C 0.141 3.859 6 H 0.120 0.880 7 C -0.164 4.164 8 N -0.280 5.280 9 C -0.044 4.044 10 C -0.009 4.009 11 C 0.067 3.933 12 C -0.519 4.519 13 H 0.017 0.983 14 C 0.001 3.999 15 N -0.956 5.956 16 Si 0.960 3.040 17 H -0.254 1.254 18 H -0.287 1.287 19 H -0.243 1.243 20 N -0.312 5.312 21 N -0.126 5.126 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.227 0.773 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.377 -7.078 -5.185 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.009 4.009 4 C -0.162 4.162 5 C 0.040 3.960 6 H 0.138 0.862 7 C -0.222 4.222 8 N -0.076 5.076 9 C -0.195 4.195 10 C -0.147 4.147 11 C 0.028 3.972 12 C -0.557 4.557 13 H 0.036 0.964 14 C -0.194 4.194 15 N -0.596 5.596 16 Si 0.782 3.218 17 H -0.178 1.178 18 H -0.213 1.213 19 H -0.166 1.166 20 N -0.178 5.178 21 N -0.104 5.104 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.224 -6.973 -3.646 27.379 hybrid contribution 0.707 0.055 -0.934 1.172 sum -25.517 -6.919 -4.580 26.832 Atomic orbital electron populations 1.22935 0.79076 1.03786 1.01212 1.87838 1.21789 1.28770 1.95711 1.22517 0.90976 0.84867 1.02554 1.21777 0.95647 0.94794 1.03945 1.21865 0.71784 0.98588 1.03723 0.86233 1.22337 1.05301 1.00613 0.93942 1.47759 1.09854 1.45258 1.04727 1.23678 0.88289 1.09726 0.97771 1.22435 0.97368 1.04401 0.90515 1.17976 0.87492 0.96246 0.95525 1.21130 0.98844 1.07924 1.27800 0.96434 1.26090 0.96096 0.98748 0.98514 1.70095 1.08475 1.34421 1.46658 0.85528 0.77331 0.79780 0.79197 1.17837 1.21305 1.16620 1.75004 1.07474 1.17759 1.17535 1.78096 0.99111 1.21844 1.11356 0.92428 0.88990 0.93106 0.89870 0.91730 0.92398 0.89853 0.89918 0.86293 0.91828 0.75613 0.94842 0.92110 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.14 10.70 -148.98 -1.59 -8.73 16 3 C 0.07 0.84 5.69 71.98 0.41 1.25 16 4 C -0.12 -2.13 5.38 30.59 0.16 -1.97 16 5 C 0.14 2.66 3.32 44.99 0.15 2.81 16 6 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.16 -2.00 8.59 71.98 0.62 -1.38 16 8 N -0.28 -8.85 3.25 -327.16 -1.06 -9.91 16 9 C -0.04 -1.47 10.61 83.49 0.89 -0.59 16 10 C -0.01 -0.39 6.44 41.60 0.27 -0.12 16 11 C 0.07 3.27 4.62 29.10 0.13 3.40 16 12 C -0.52 -31.75 9.64 25.60 0.25 -31.50 16 13 H 0.02 1.23 7.98 -2.91 -0.02 1.20 16 14 C 0.00 0.09 5.47 84.65 0.46 0.55 16 15 N -0.96 -62.18 13.96 21.45 0.30 -61.88 16 16 Si 0.96 44.04 27.47 68.60 1.88 45.93 16 17 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 20 N -0.31 -15.64 12.40 -48.60 -0.60 -16.24 16 21 N -0.13 -5.29 13.16 37.02 0.49 -4.80 16 22 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 23 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.08 0.59 6.57 -2.39 -0.02 0.57 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 0.90 7.18 -2.39 -0.02 0.88 16 30 H 0.12 0.63 6.57 -2.39 -0.02 0.62 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.23 5.16 7.31 -2.91 -0.02 5.14 16 33 H 0.03 1.65 7.20 -2.39 -0.02 1.63 16 34 H 0.06 2.58 7.55 -2.38 -0.02 2.56 16 35 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 Total: -1.00 -83.00 296.27 5.01 -77.99 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.01 Total: 3.71 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.59 Total: -26.06 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -0.88 Total: -92.84 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.59 Total: -8.73 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -83.00 5.01 -77.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603233961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.879 kcal (2) G-P(sol) polarization free energy of solvation -83.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds