Wall clock time and date at job start Sun Mar 29 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47489 * 2 1 4 4 C 1.53005 * 109.46634 * 60.00404 * 3 2 1 5 5 O 1.42893 * 109.46992 * 300.00596 * 3 2 1 6 6 C 1.52997 * 109.46985 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.47042 * 185.00107 * 6 3 2 8 8 C 1.35317 * 125.87017 * 125.00329 * 7 6 3 9 9 C 1.35348 * 106.17735 * 180.21003 * 8 7 6 10 10 C 1.50695 * 126.75026 * 179.78015 * 9 8 7 11 11 C 1.50705 * 109.47409 * 124.99927 * 10 9 8 12 12 H 1.07996 * 119.99541 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99797 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99516 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00478 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46867 * 90.00149 * 15 13 11 17 17 H 1.48500 * 109.47005 * 210.00226 * 15 13 11 18 18 H 1.48495 * 109.46855 * 330.00338 * 15 13 11 19 19 N 1.33774 * 106.49647 * 359.63857 * 9 8 7 20 20 N 1.28636 * 108.88665 * 0.37294 * 19 9 8 21 21 H 1.09005 * 109.46838 * 299.99917 * 1 2 3 22 22 H 1.08998 * 109.47088 * 59.99586 * 1 2 3 23 23 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46838 * 240.00082 * 2 1 3 25 25 H 1.08998 * 109.47088 * 120.00414 * 2 1 3 26 26 H 1.09000 * 109.46717 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.46741 * 299.99706 * 4 3 2 28 28 H 1.08998 * 109.47375 * 59.99934 * 4 3 2 29 29 H 0.96700 * 114.00172 * 299.99334 * 5 3 2 30 30 H 1.09005 * 109.47005 * 65.00688 * 6 3 2 31 31 H 1.08999 * 109.47730 * 305.00477 * 6 3 2 32 32 H 1.08002 * 126.90702 * 359.93974 * 8 7 6 33 33 H 1.09009 * 109.46604 * 244.99136 * 10 9 8 34 34 H 1.08993 * 109.47327 * 4.99084 * 10 9 8 35 35 H 0.96998 * 119.99491 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2494 5 8 1.5637 2.1161 -1.1667 6 6 3.5700 1.4423 0.0006 7 7 4.0584 2.8183 0.1211 8 6 4.9154 3.2759 1.0630 9 6 5.0900 4.5932 0.8059 10 6 5.9538 5.5560 1.5791 11 6 6.9258 6.2237 0.6408 12 1 6.9191 5.9754 -0.4102 13 6 7.8244 7.1509 1.1244 14 7 8.6730 7.7332 0.3057 15 14 7.8366 7.5799 2.9424 16 1 8.7677 6.6718 3.6591 17 1 8.2838 8.9853 3.1164 18 1 6.4679 7.4237 3.4970 19 7 4.3475 4.8716 -0.2715 20 7 3.7464 3.7996 -0.6513 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8931 3.1914 1.2492 27 1 0.4401 2.1637 1.2493 28 1 1.8934 1.6498 2.1393 29 1 1.8490 1.7127 -1.9979 30 1 3.9337 1.0080 -0.9306 31 1 3.9331 0.8530 0.8426 32 1 5.3656 2.7056 1.8621 33 1 5.3244 6.3121 2.0486 34 1 6.5046 5.0135 2.3474 35 1 9.3050 8.3858 0.6458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603265851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:46 Heat of formation + Delta-G solvation = 39.464376 kcal Electronic energy + Delta-G solvation = -17148.347452 eV Core-core repulsion = 14376.723065 eV Total energy + Delta-G solvation = -2771.624387 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.55661 -38.89158 -34.30372 -33.46752 -32.89085 -31.21779 -29.81929 -28.08683 -27.34209 -24.23915 -23.06234 -21.25510 -20.70197 -19.77116 -17.18904 -16.76992 -16.41293 -15.86352 -15.58518 -14.76738 -14.27875 -14.07446 -13.93591 -13.18621 -12.65910 -12.53478 -12.50427 -12.33553 -12.13196 -11.99667 -11.90884 -11.31449 -11.09964 -10.91859 -10.59463 -10.52306 -10.25677 -10.04350 -9.76937 -9.29308 -9.25270 -8.50583 -8.18508 -5.96797 -3.94439 2.24609 2.75426 3.33460 3.41866 3.44111 3.49136 3.92475 4.25756 4.39770 4.47824 4.49108 4.71881 4.93587 5.04763 5.16578 5.26024 5.31498 5.36060 5.53884 5.58095 5.65149 5.73511 5.77115 5.94263 6.00734 6.10262 6.28988 6.91318 7.14800 7.17816 7.26261 7.53633 7.76924 8.61509 9.11801 9.35248 9.62501 11.16864 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058487 B = 0.004899 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.627668 B = 5714.480425 C = 5902.775014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.124 3.876 4 C -0.143 4.143 5 O -0.533 6.533 6 C 0.092 3.908 7 N -0.298 5.298 8 C -0.089 4.089 9 C 0.038 3.962 10 C 0.059 3.941 11 C -0.505 4.505 12 H 0.076 0.924 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 N -0.261 5.261 20 N -0.080 5.080 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.374 0.626 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.179 0.821 33 H 0.037 0.963 34 H 0.029 0.971 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 -18.919 2.954 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.081 3.919 4 C -0.200 4.200 5 O -0.338 6.338 6 C -0.031 4.031 7 N -0.094 5.094 8 C -0.237 4.237 9 C -0.099 4.099 10 C 0.021 3.979 11 C -0.544 4.544 12 H 0.094 0.906 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.189 1.189 19 N -0.128 5.128 20 N -0.059 5.059 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.221 0.779 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.196 0.804 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.651 -17.970 2.167 23.286 hybrid contribution 1.181 -0.700 1.440 1.990 sum -13.470 -18.669 3.607 23.302 Atomic orbital electron populations 1.21719 0.94472 1.01419 1.02965 1.22159 0.97888 0.95546 1.02922 1.21434 0.89586 0.92258 0.88571 1.21789 1.02397 1.01519 0.94301 1.86716 1.75773 1.56543 1.14789 1.22706 0.96499 0.78948 1.04928 1.47002 1.31539 1.09791 1.21049 1.23286 1.02886 0.97221 1.00347 1.22452 0.98875 0.93175 0.95380 1.18133 0.92998 0.92325 0.94489 1.20934 1.14962 1.22285 0.96183 0.90593 1.24980 0.95189 0.95636 0.97586 1.69908 1.21005 1.28279 1.34880 0.86824 0.78826 0.77875 0.86078 1.20273 1.21245 1.18905 1.75141 1.08950 1.17131 1.11617 1.78361 1.20089 0.90615 1.16785 0.92272 0.91792 0.92794 0.91300 0.90818 0.91552 0.91080 0.91288 0.77891 0.88818 0.87567 0.80387 0.94521 0.95263 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.41 37.16 0.35 -0.67 16 2 C -0.15 -0.94 5.17 -26.73 -0.14 -1.08 16 3 C 0.12 1.18 0.81 -90.62 -0.07 1.10 16 4 C -0.14 -1.56 8.28 37.16 0.31 -1.25 16 5 O -0.53 -6.21 11.34 -35.23 -0.40 -6.61 16 6 C 0.09 0.93 5.64 -4.05 -0.02 0.91 16 7 N -0.30 -4.83 2.47 -61.26 -0.15 -4.98 16 8 C -0.09 -1.58 11.49 -17.05 -0.20 -1.77 16 9 C 0.04 0.87 6.44 -82.78 -0.53 0.34 16 10 C 0.06 1.48 4.62 -29.04 -0.13 1.34 16 11 C -0.51 -15.02 9.64 -34.44 -0.33 -15.35 16 12 H 0.08 2.52 7.98 -52.49 -0.42 2.10 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 15 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 19 N -0.26 -6.34 12.40 33.29 0.41 -5.93 16 20 N -0.08 -1.63 12.04 60.35 0.73 -0.90 16 21 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 22 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.98 7.43 -51.93 -0.39 0.60 16 27 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.37 3.11 9.05 45.56 0.41 3.52 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.04 0.92 7.20 -51.92 -0.37 0.55 16 34 H 0.03 0.66 7.55 -51.93 -0.39 0.27 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -36.15 292.30 -4.12 -40.27 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.35 Total: -0.96 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -0.87 Total: -14.53 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 1.76 Total: -39.49 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.40 Total: -6.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.15 -4.12 -40.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.738 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds