Wall clock time and date at job start Sun Mar 29 2020 22:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47489 * 2 1 4 4 C 1.53005 * 109.46634 * 60.00404 * 3 2 1 5 5 O 1.42893 * 109.46992 * 300.00596 * 3 2 1 6 6 C 1.52997 * 109.46985 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.47042 * 185.00107 * 6 3 2 8 8 C 1.35317 * 125.87017 * 125.00329 * 7 6 3 9 9 C 1.35348 * 106.17735 * 180.21003 * 8 7 6 10 10 C 1.50695 * 126.75026 * 179.78015 * 9 8 7 11 11 C 1.50705 * 109.47409 * 124.99927 * 10 9 8 12 12 H 1.07996 * 119.99541 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99797 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99516 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00478 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46867 * 90.00149 * 15 13 11 17 17 H 1.48500 * 109.47005 * 210.00226 * 15 13 11 18 18 H 1.48495 * 109.46855 * 330.00338 * 15 13 11 19 19 N 1.33774 * 106.49647 * 359.63857 * 9 8 7 20 20 N 1.28636 * 108.88665 * 0.37294 * 19 9 8 21 21 H 1.09005 * 109.46838 * 299.99917 * 1 2 3 22 22 H 1.08998 * 109.47088 * 59.99586 * 1 2 3 23 23 H 1.08996 * 109.47535 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46838 * 240.00082 * 2 1 3 25 25 H 1.08998 * 109.47088 * 120.00414 * 2 1 3 26 26 H 1.09000 * 109.46717 * 180.02562 * 4 3 2 27 27 H 1.08998 * 109.46741 * 299.99706 * 4 3 2 28 28 H 1.08998 * 109.47375 * 59.99934 * 4 3 2 29 29 H 0.96700 * 114.00172 * 299.99334 * 5 3 2 30 30 H 1.09005 * 109.47005 * 65.00688 * 6 3 2 31 31 H 1.08999 * 109.47730 * 305.00477 * 6 3 2 32 32 H 1.08002 * 126.90702 * 359.93974 * 8 7 6 33 33 H 1.09009 * 109.46604 * 244.99136 * 10 9 8 34 34 H 1.08993 * 109.47327 * 4.99084 * 10 9 8 35 35 H 0.96998 * 119.99491 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1636 1.2494 5 8 1.5637 2.1161 -1.1667 6 6 3.5700 1.4423 0.0006 7 7 4.0584 2.8183 0.1211 8 6 4.9154 3.2759 1.0630 9 6 5.0900 4.5932 0.8059 10 6 5.9538 5.5560 1.5791 11 6 6.9258 6.2237 0.6408 12 1 6.9191 5.9754 -0.4102 13 6 7.8244 7.1509 1.1244 14 7 8.6730 7.7332 0.3057 15 14 7.8366 7.5799 2.9424 16 1 8.7677 6.6718 3.6591 17 1 8.2838 8.9853 3.1164 18 1 6.4679 7.4237 3.4970 19 7 4.3475 4.8716 -0.2715 20 7 3.7464 3.7996 -0.6513 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8931 3.1914 1.2492 27 1 0.4401 2.1637 1.2493 28 1 1.8934 1.6498 2.1393 29 1 1.8490 1.7127 -1.9979 30 1 3.9337 1.0080 -0.9306 31 1 3.9331 0.8530 0.8426 32 1 5.3656 2.7056 1.8621 33 1 5.3244 6.3121 2.0486 34 1 6.5046 5.0135 2.3474 35 1 9.3050 8.3858 0.6458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603265851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:46 Heat of formation + Delta-G solvation = 10.777261 kcal Electronic energy + Delta-G solvation = -17149.591419 eV Core-core repulsion = 14376.723065 eV Total energy + Delta-G solvation = -2772.868353 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.01267 -39.68879 -35.83241 -34.88126 -34.05382 -33.06034 -30.70736 -29.76996 -28.40007 -25.14541 -24.94804 -22.58557 -21.87919 -20.92165 -18.90495 -18.30193 -17.62857 -16.80232 -16.37141 -16.23050 -15.71238 -15.49804 -15.07925 -14.68408 -14.14031 -13.96873 -13.41978 -13.26932 -13.13661 -12.97030 -12.82543 -12.73581 -12.41314 -12.25410 -11.96013 -11.83878 -11.64743 -11.60579 -11.35667 -11.12176 -10.73738 -10.53685 -9.79669 -8.23964 -6.29178 0.85470 1.40490 1.45549 1.57167 1.64130 1.82470 2.41516 3.10142 3.20411 3.51199 3.60193 3.78972 3.87067 4.09231 4.29502 4.32092 4.46424 4.50419 4.60303 4.66628 4.79482 4.84170 4.98343 5.03195 5.08815 5.12670 5.31840 5.37733 5.40960 5.47498 5.64144 5.91917 6.33538 6.76087 6.88297 7.32544 7.81489 8.94090 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058487 B = 0.004899 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.627668 B = 5714.480425 C = 5902.775014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.124 3.876 4 C -0.144 4.144 5 O -0.563 6.563 6 C 0.076 3.924 7 N -0.278 5.278 8 C -0.057 4.057 9 C -0.012 4.012 10 C 0.067 3.933 11 C -0.518 4.518 12 H 0.016 0.984 13 C 0.001 3.999 14 N -0.956 5.956 15 Si 0.961 3.039 16 H -0.254 1.254 17 H -0.287 1.287 18 H -0.244 1.244 19 N -0.324 5.324 20 N -0.096 5.096 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.385 0.615 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.230 0.770 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -22.067 5.662 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.083 3.917 4 C -0.201 4.201 5 O -0.370 6.370 6 C -0.044 4.044 7 N -0.073 5.073 8 C -0.207 4.207 9 C -0.150 4.150 10 C 0.028 3.972 11 C -0.557 4.557 12 H 0.035 0.965 13 C -0.195 4.195 14 N -0.597 5.597 15 Si 0.783 3.217 16 H -0.178 1.178 17 H -0.213 1.213 18 H -0.167 1.167 19 N -0.190 5.190 20 N -0.075 5.075 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.115 0.885 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.234 0.766 30 H 0.133 0.867 31 H 0.168 0.832 32 H 0.246 0.754 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.122 -21.165 4.838 26.458 hybrid contribution 1.241 0.152 0.473 1.336 sum -13.881 -21.014 5.311 25.738 Atomic orbital electron populations 1.21726 0.95089 1.02013 1.01918 1.22093 0.97188 0.93136 1.04926 1.21550 0.89086 0.93898 0.87196 1.21831 1.02501 0.99344 0.96410 1.86691 1.76335 1.57914 1.16107 1.23411 0.97007 0.75922 1.08084 1.47454 1.29640 1.11087 1.19097 1.23807 1.01038 0.95498 1.00370 1.22391 1.00747 0.95405 0.96458 1.17949 0.92229 0.92814 0.94180 1.21147 1.16662 1.23319 0.94553 0.96536 1.26101 0.94264 0.95090 1.04044 1.70097 1.22254 1.29345 1.37997 0.85515 0.80256 0.77708 0.78271 1.17794 1.21278 1.16719 1.75047 1.10888 1.19675 1.13402 1.78222 1.20425 0.90998 1.17866 0.92930 0.93337 0.91328 0.89531 0.88507 0.96018 0.91152 0.88584 0.76577 0.86687 0.83187 0.75351 0.95140 0.92220 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.41 71.98 0.68 -0.99 16 2 C -0.14 -1.18 5.17 30.59 0.16 -1.02 16 3 C 0.12 2.02 0.81 -10.79 -0.01 2.01 16 4 C -0.14 -2.85 8.28 71.98 0.60 -2.25 16 5 O -0.56 -12.60 11.34 -148.98 -1.69 -14.29 16 6 C 0.08 1.23 5.64 86.38 0.49 1.71 16 7 N -0.28 -8.41 2.47 -347.74 -0.86 -9.27 16 8 C -0.06 -1.87 11.49 83.49 0.96 -0.91 16 9 C -0.01 -0.54 6.44 41.59 0.27 -0.27 16 10 C 0.07 3.33 4.62 29.10 0.13 3.46 16 11 C -0.52 -32.00 9.64 25.60 0.25 -31.75 16 12 H 0.02 1.16 7.98 -2.91 -0.02 1.14 16 13 C 0.00 0.05 5.47 84.65 0.46 0.52 16 14 N -0.96 -62.54 13.96 21.45 0.30 -62.24 16 15 Si 0.96 44.33 27.47 68.60 1.88 46.22 16 16 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 19 N -0.32 -16.35 12.40 -48.60 -0.60 -16.95 16 20 N -0.10 -3.98 12.04 37.02 0.45 -3.54 16 21 H 0.05 0.65 6.43 -2.38 -0.02 0.63 16 22 H 0.05 0.69 7.68 -2.39 -0.02 0.67 16 23 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.02 0.61 7.43 -2.39 -0.02 0.59 16 27 H 0.07 1.37 6.43 -2.39 -0.02 1.35 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.39 6.02 9.05 -74.06 -0.67 5.35 16 30 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.15 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.23 4.89 8.06 -2.91 -0.02 4.87 16 33 H 0.03 1.52 7.20 -2.38 -0.02 1.50 16 34 H 0.06 2.55 7.55 -2.39 -0.02 2.54 16 35 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -86.18 292.30 3.82 -82.36 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.36 Total: 7.20 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 3.98 Total: -29.49 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -0.72 Total: -91.99 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.69 Total: -14.29 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.22 kcal Total: -86.18 3.82 -82.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.141 kcal (2) G-P(sol) polarization free energy of solvation -86.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds