Wall clock time and date at job start Sun Mar 29 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46770 * 2 1 4 4 C 1.52997 * 109.47114 * 304.99694 * 3 2 1 5 5 O 1.42899 * 109.47279 * 65.00096 * 3 2 1 6 6 C 1.53002 * 109.46814 * 184.99614 * 3 2 1 7 7 N 1.46503 * 109.47069 * 179.97438 * 6 3 2 8 8 C 1.35312 * 125.86851 * 125.00004 * 7 6 3 9 9 C 1.35341 * 106.17598 * 180.02562 * 8 7 6 10 10 C 1.50700 * 126.75090 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46869 * 125.00400 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.33772 * 106.49948 * 0.26771 * 9 8 7 20 20 N 1.28637 * 108.88114 * 359.55958 * 19 9 8 21 21 H 1.08998 * 109.46353 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47083 * 300.00399 * 1 2 3 23 23 H 1.08999 * 109.46615 * 60.00302 * 1 2 3 24 24 H 1.08998 * 109.47083 * 239.99601 * 2 1 3 25 25 H 1.08996 * 109.47074 * 119.99471 * 2 1 3 26 26 H 1.09004 * 109.47233 * 300.00371 * 4 3 2 27 27 H 1.08993 * 109.47381 * 59.99810 * 4 3 2 28 28 H 1.09001 * 109.47084 * 180.02562 * 4 3 2 29 29 H 0.96695 * 114.00525 * 59.99481 * 5 3 2 30 30 H 1.09004 * 109.46852 * 60.00045 * 6 3 2 31 31 H 1.08991 * 109.47483 * 299.99926 * 6 3 2 32 32 H 1.08001 * 126.90658 * 359.97438 * 8 7 6 33 33 H 1.09004 * 109.47210 * 5.00693 * 10 9 8 34 34 H 1.08994 * 109.47551 * 245.00345 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4444 -0.1256 7 7 4.0531 2.8257 -0.1263 8 6 4.9818 3.3386 0.7135 9 6 5.1297 4.6377 0.3640 10 6 6.0525 5.6438 1.0022 11 6 6.9395 6.2522 -0.0534 12 1 6.8442 5.9418 -1.0834 13 6 7.8684 7.2099 0.2948 14 7 7.9842 7.5882 1.5491 15 14 8.9625 7.9695 -1.0148 16 1 8.6364 7.3773 -2.3369 17 1 8.7348 9.4363 -1.0602 18 1 10.3859 7.6995 -0.6885 19 7 4.2910 4.8548 -0.6553 20 7 3.6719 3.7599 -0.9253 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 1.7183 1.7117 -2.1130 27 1 0.3437 2.1977 -1.0922 28 1 1.7936 3.2267 -1.1819 29 1 2.0140 1.6543 2.0139 30 1 3.8532 0.9570 -1.0570 31 1 3.9994 0.9054 0.7161 32 1 5.5001 2.8166 1.5043 33 1 6.6683 5.1475 1.7522 34 1 5.4628 6.4278 1.4771 35 1 8.6379 8.2616 1.7941 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603265852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:48 Heat of formation + Delta-G solvation = 38.718025 kcal Electronic energy + Delta-G solvation = -17116.410167 eV Core-core repulsion = 14344.753416 eV Total energy + Delta-G solvation = -2771.656751 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.50511 -38.88803 -34.28732 -33.49193 -32.94179 -31.02019 -29.77623 -27.44559 -27.28063 -24.18462 -23.33972 -21.19361 -20.60954 -20.01665 -17.23055 -16.54570 -16.07216 -15.87012 -15.52852 -14.67456 -14.45354 -14.04482 -13.99326 -12.81363 -12.62811 -12.58169 -12.34539 -12.21103 -12.19669 -11.78219 -11.61405 -11.27787 -10.91126 -10.84349 -10.69316 -10.51110 -10.23846 -10.01573 -9.63668 -9.33423 -9.16536 -8.39630 -8.06039 -5.96165 -3.96378 2.28207 2.79371 3.37230 3.43967 3.49474 3.58041 4.00316 4.16406 4.48579 4.53929 4.56076 4.73696 5.04011 5.08886 5.23085 5.33119 5.38765 5.41877 5.58673 5.72613 5.74184 5.87309 5.93933 5.99864 6.14443 6.37268 6.50751 7.18769 7.25001 7.47859 7.57474 7.67158 8.01989 8.41227 9.07478 9.37789 9.66299 11.15050 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.063614 B = 0.004678 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.046003 B = 5984.321266 C = 6135.842486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.122 3.878 4 C -0.157 4.157 5 O -0.545 6.545 6 C 0.092 3.908 7 N -0.294 5.294 8 C -0.083 4.083 9 C 0.036 3.964 10 C 0.092 3.908 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.285 1.285 19 N -0.264 5.264 20 N -0.102 5.102 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.372 0.628 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.179 0.821 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 -17.980 -0.462 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.081 3.919 4 C -0.214 4.214 5 O -0.350 6.350 6 C -0.031 4.031 7 N -0.090 5.090 8 C -0.231 4.231 9 C -0.101 4.101 10 C 0.053 3.947 11 C -0.540 4.540 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.211 1.211 19 N -0.131 5.131 20 N -0.081 5.081 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.219 0.781 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.196 0.804 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.451 -17.105 -1.953 21.246 hybrid contribution 1.728 -0.555 0.708 1.948 sum -10.723 -17.660 -1.245 20.698 Atomic orbital electron populations 1.21748 0.94524 1.01414 1.02974 1.22144 0.97901 0.95514 1.02822 1.21540 0.90393 0.92779 0.87235 1.22130 1.01094 1.03980 0.94234 1.86701 1.76408 1.57079 1.14852 1.22699 0.96476 0.78895 1.05005 1.46880 1.28260 1.10273 1.23537 1.23295 1.00469 0.96908 1.02477 1.22963 0.98078 0.94234 0.94863 1.17722 0.90967 0.90807 0.95207 1.21100 1.17259 1.21367 0.94296 0.92251 1.24979 0.97451 0.96602 0.95446 1.69961 1.35824 1.31709 1.16357 0.86462 0.80017 0.79095 0.82038 1.19717 1.20948 1.21132 1.75074 1.08006 1.15429 1.14596 1.77984 1.21304 0.92575 1.16198 0.92821 0.91990 0.91996 0.90715 0.91481 0.91385 0.91793 0.88167 0.78125 0.88290 0.88157 0.80433 0.94653 0.94326 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.32 37.16 0.35 -0.76 16 2 C -0.15 -1.02 5.20 -26.73 -0.14 -1.16 16 3 C 0.12 1.25 0.85 -90.62 -0.08 1.17 16 4 C -0.16 -1.91 7.92 37.16 0.29 -1.62 16 5 O -0.55 -6.46 12.38 -35.23 -0.44 -6.89 16 6 C 0.09 0.98 5.65 -4.04 -0.02 0.96 16 7 N -0.29 -4.91 3.31 -61.26 -0.20 -5.11 16 8 C -0.08 -1.53 11.49 -17.05 -0.20 -1.73 16 9 C 0.04 0.84 6.44 -82.78 -0.53 0.31 16 10 C 0.09 2.45 5.55 -29.03 -0.16 2.28 16 11 C -0.50 -14.70 9.09 -34.44 -0.31 -15.01 16 12 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 N -0.26 -6.44 12.40 33.29 0.41 -6.02 16 20 N -0.10 -2.09 9.95 60.35 0.60 -1.49 16 21 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.06 0.51 7.82 -51.93 -0.41 0.11 16 23 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.72 6.34 -51.93 -0.33 0.39 16 28 H 0.10 1.62 5.31 -51.93 -0.28 1.34 16 29 H 0.37 2.94 9.05 45.56 0.41 3.35 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 34 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -34.78 293.18 -4.66 -39.44 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.27 Total: -1.41 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.90 Total: -14.03 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 1.55 Total: -38.84 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.44 Total: -6.89 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.78 -4.66 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.155 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds