Wall clock time and date at job start Sun Mar 29 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46770 * 2 1 4 4 C 1.52997 * 109.47114 * 304.99694 * 3 2 1 5 5 O 1.42899 * 109.47279 * 65.00096 * 3 2 1 6 6 C 1.53002 * 109.46814 * 184.99614 * 3 2 1 7 7 N 1.46503 * 109.47069 * 179.97438 * 6 3 2 8 8 C 1.35312 * 125.86851 * 125.00004 * 7 6 3 9 9 C 1.35341 * 106.17598 * 180.02562 * 8 7 6 10 10 C 1.50700 * 126.75090 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46869 * 125.00400 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.33772 * 106.49948 * 0.26771 * 9 8 7 20 20 N 1.28637 * 108.88114 * 359.55958 * 19 9 8 21 21 H 1.08998 * 109.46353 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47083 * 300.00399 * 1 2 3 23 23 H 1.08999 * 109.46615 * 60.00302 * 1 2 3 24 24 H 1.08998 * 109.47083 * 239.99601 * 2 1 3 25 25 H 1.08996 * 109.47074 * 119.99471 * 2 1 3 26 26 H 1.09004 * 109.47233 * 300.00371 * 4 3 2 27 27 H 1.08993 * 109.47381 * 59.99810 * 4 3 2 28 28 H 1.09001 * 109.47084 * 180.02562 * 4 3 2 29 29 H 0.96695 * 114.00525 * 59.99481 * 5 3 2 30 30 H 1.09004 * 109.46852 * 60.00045 * 6 3 2 31 31 H 1.08991 * 109.47483 * 299.99926 * 6 3 2 32 32 H 1.08001 * 126.90658 * 359.97438 * 8 7 6 33 33 H 1.09004 * 109.47210 * 5.00693 * 10 9 8 34 34 H 1.08994 * 109.47551 * 245.00345 * 10 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 8 1.6619 2.0814 1.2210 6 6 3.5648 1.4444 -0.1256 7 7 4.0531 2.8257 -0.1263 8 6 4.9818 3.3386 0.7135 9 6 5.1297 4.6377 0.3640 10 6 6.0525 5.6438 1.0022 11 6 6.9395 6.2522 -0.0534 12 1 6.8442 5.9418 -1.0834 13 6 7.8684 7.2099 0.2948 14 7 7.9842 7.5882 1.5491 15 14 8.9625 7.9695 -1.0148 16 1 8.6364 7.3773 -2.3369 17 1 8.7348 9.4363 -1.0602 18 1 10.3859 7.6995 -0.6885 19 7 4.2910 4.8548 -0.6553 20 7 3.6719 3.7599 -0.9253 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 1.7183 1.7117 -2.1130 27 1 0.3437 2.1977 -1.0922 28 1 1.7936 3.2267 -1.1819 29 1 2.0140 1.6543 2.0139 30 1 3.8532 0.9570 -1.0570 31 1 3.9994 0.9054 0.7161 32 1 5.5001 2.8166 1.5043 33 1 6.6683 5.1475 1.7522 34 1 5.4628 6.4278 1.4771 35 1 8.6379 8.2616 1.7941 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603265852.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:48 Heat of formation + Delta-G solvation = 12.233997 kcal Electronic energy + Delta-G solvation = -17117.558601 eV Core-core repulsion = 14344.753416 eV Total energy + Delta-G solvation = -2772.805185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.01596 -39.73158 -35.86799 -34.90817 -34.14662 -32.84196 -30.75589 -29.17300 -28.43794 -25.41113 -25.01468 -22.59557 -21.83792 -21.16705 -18.59193 -18.22808 -17.57520 -16.85055 -16.55656 -16.23480 -15.71096 -15.54053 -14.81197 -14.48242 -14.27653 -13.75488 -13.39373 -13.33964 -13.14258 -13.09162 -12.89784 -12.72883 -12.62946 -12.09230 -11.89375 -11.76519 -11.64091 -11.62124 -11.29847 -11.21167 -10.60272 -10.48910 -9.77670 -8.18395 -6.27070 0.83625 1.39713 1.41613 1.54588 1.62330 1.82947 2.45031 3.14184 3.26524 3.34379 3.70461 3.73210 3.92693 4.13233 4.31746 4.34380 4.45649 4.53471 4.62215 4.77960 4.84161 4.92413 5.01486 5.09916 5.17665 5.32270 5.38055 5.45643 5.55621 5.57919 5.77624 5.95263 6.23876 6.81561 6.83002 7.39624 7.78794 8.92813 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.063614 B = 0.004678 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.046003 B = 5984.321266 C = 6135.842486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.125 3.875 4 C -0.161 4.161 5 O -0.573 6.573 6 C 0.076 3.924 7 N -0.274 5.274 8 C -0.054 4.054 9 C -0.010 4.010 10 C 0.102 3.898 11 C -0.523 4.523 12 H 0.044 0.956 13 C 0.007 3.993 14 N -0.928 5.928 15 Si 0.963 3.037 16 H -0.274 1.274 17 H -0.277 1.277 18 H -0.269 1.269 19 N -0.319 5.319 20 N -0.107 5.107 21 H 0.069 0.931 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.389 0.611 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.223 0.777 33 H 0.034 0.966 34 H 0.004 0.996 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 -20.768 -0.520 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.084 3.916 4 C -0.218 4.218 5 O -0.381 6.381 6 C -0.044 4.044 7 N -0.069 5.069 8 C -0.204 4.204 9 C -0.149 4.149 10 C 0.064 3.936 11 C -0.561 4.561 12 H 0.062 0.938 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.195 1.195 19 N -0.185 5.185 20 N -0.085 5.085 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.238 0.762 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.239 0.761 33 H 0.052 0.948 34 H 0.022 0.978 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.059 -19.926 -2.013 23.378 hybrid contribution 1.479 0.193 0.751 1.670 sum -10.580 -19.733 -1.263 22.426 Atomic orbital electron populations 1.21756 0.95123 1.02084 1.01896 1.22085 0.97233 0.93072 1.04882 1.21559 0.89858 0.94322 0.85863 1.22129 1.01377 1.01979 0.96353 1.86674 1.76968 1.58334 1.16121 1.23407 0.96967 0.75742 1.08260 1.47336 1.26463 1.11705 1.21413 1.23688 0.99351 0.95170 1.02231 1.22617 0.99577 0.96042 0.96623 1.17367 0.90819 0.90824 0.94611 1.21319 1.18311 1.22301 0.94175 0.93802 1.25811 0.98724 0.96842 0.97692 1.70053 1.36527 1.32169 1.18045 0.85426 0.78587 0.78173 0.78995 1.19877 1.20270 1.19462 1.74982 1.09512 1.17922 1.16053 1.77942 1.20987 0.92592 1.17028 0.91241 0.93278 0.92964 0.89006 0.88999 0.89963 0.91664 0.92327 0.76176 0.86041 0.83696 0.76067 0.94825 0.97797 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.32 71.98 0.67 -1.17 16 2 C -0.13 -1.33 5.20 30.60 0.16 -1.17 16 3 C 0.13 2.19 0.85 -10.79 -0.01 2.18 16 4 C -0.16 -3.75 7.92 71.98 0.57 -3.18 16 5 O -0.57 -12.34 12.38 -148.98 -1.84 -14.19 16 6 C 0.08 1.31 5.65 86.38 0.49 1.80 16 7 N -0.27 -8.57 3.31 -347.73 -1.15 -9.72 16 8 C -0.05 -1.91 11.49 83.49 0.96 -0.95 16 9 C -0.01 -0.50 6.44 41.59 0.27 -0.23 16 10 C 0.10 5.69 5.55 29.10 0.16 5.85 16 11 C -0.52 -31.57 9.09 25.60 0.23 -31.34 16 12 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.01 0.43 5.46 84.66 0.46 0.89 16 14 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 15 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 16 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 N -0.32 -16.02 12.40 -48.60 -0.60 -16.62 16 20 N -0.11 -4.38 9.95 37.02 0.37 -4.01 16 21 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 22 H 0.05 0.72 7.82 -2.39 -0.02 0.71 16 23 H 0.05 0.73 6.34 -2.39 -0.02 0.71 16 24 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.06 1.45 6.34 -2.39 -0.02 1.44 16 28 H 0.06 1.91 5.31 -2.39 -0.01 1.89 16 29 H 0.39 4.94 9.05 -74.06 -0.67 4.27 16 30 H 0.12 1.66 8.14 -2.38 -0.02 1.65 16 31 H 0.15 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.22 5.57 8.06 -2.91 -0.02 5.55 16 33 H 0.03 1.82 8.12 -2.38 -0.02 1.80 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -79.52 293.18 3.46 -76.05 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 0.42 Total: 3.68 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.96 Total: -27.32 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -1.10 Total: -86.52 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.84 Total: -14.19 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -79.52 3.46 -76.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603265852.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.287 kcal (2) G-P(sol) polarization free energy of solvation -79.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds