Wall clock time and date at job start Sun Mar 29 2020 22:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99928 * 2 1 4 4 C 1.52995 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47253 * 66.89892 * 4 3 2 6 6 C 1.46905 * 111.00054 * 53.35711 * 5 4 3 7 7 C 1.50696 * 109.47050 * 66.04830 * 6 5 4 8 8 H 1.08003 * 120.00455 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99907 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99732 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00059 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46945 * 90.00120 * 11 9 7 13 13 H 1.48496 * 109.47216 * 209.99647 * 11 9 7 14 14 H 1.48504 * 109.47292 * 330.00042 * 11 9 7 15 15 C 1.46896 * 111.00096 * 289.40204 * 5 4 3 16 16 C 1.50699 * 109.47131 * 298.00134 * 15 5 4 17 17 C 1.39877 * 126.03883 * 266.08446 * 16 15 5 18 18 N 1.30842 * 108.20026 * 179.81732 * 17 16 15 19 19 N 1.40089 * 108.20605 * 0.43460 * 18 17 16 20 20 H 0.96996 * 126.03735 * 179.69425 * 19 18 17 21 21 C 1.34948 * 107.92230 * 359.72506 * 19 18 17 22 22 H 1.08998 * 109.47155 * 59.99819 * 1 2 3 23 23 H 1.08995 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47095 * 299.99841 * 1 2 3 25 25 H 1.08999 * 109.46766 * 60.00017 * 3 2 1 26 26 H 1.08998 * 109.46987 * 300.00194 * 3 2 1 27 27 H 1.09000 * 109.47099 * 306.89440 * 4 3 2 28 28 H 1.09004 * 109.46882 * 186.90111 * 4 3 2 29 29 H 1.08993 * 109.46914 * 306.04452 * 6 5 4 30 30 H 1.09000 * 109.46582 * 186.04510 * 6 5 4 31 31 H 0.97002 * 119.99500 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47365 * 57.99867 * 15 5 4 33 33 H 1.09004 * 109.47282 * 178.00340 * 15 5 4 34 34 H 1.07992 * 125.89949 * 359.97438 * 17 16 15 35 35 H 1.08001 * 126.12362 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9801 0.6046 -1.2748 6 6 3.4414 1.3600 -2.4138 7 6 4.0352 2.7450 -2.4238 8 1 4.7418 3.0353 -1.6603 9 6 3.6757 3.6421 -3.4072 10 7 2.8149 3.2888 -4.3367 11 14 4.4112 5.3592 -3.4194 12 1 5.6592 5.3574 -4.2243 13 1 3.4389 6.3099 -4.0158 14 1 4.7203 5.7751 -2.0277 15 6 3.6128 -0.8150 -1.3636 16 6 4.3011 -1.5817 -0.2639 17 6 5.5249 -2.2510 -0.3688 18 7 5.7952 -2.7926 0.7912 19 7 4.7456 -2.4930 1.6694 20 1 4.6799 -2.7714 2.5962 21 6 3.8418 -1.7492 0.9978 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8492 0.5408 0.8210 28 1 3.9782 2.1731 0.1228 29 1 2.3575 1.4300 -2.3232 30 1 3.6963 0.8487 -3.3420 31 1 2.5623 3.9198 -5.0288 32 1 2.5329 -0.9182 -1.2575 33 1 3.9224 -1.2106 -2.3310 34 1 6.1414 -2.3085 -1.2535 35 1 2.9175 -1.3574 1.3962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611268765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:21 Heat of formation + Delta-G solvation = 42.639659 kcal Electronic energy + Delta-G solvation = -17651.855736 eV Core-core repulsion = 14880.369039 eV Total energy + Delta-G solvation = -2771.486696 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80874 -38.16466 -35.80605 -32.63428 -31.31217 -30.36897 -28.87980 -26.74974 -26.07567 -23.81974 -22.94044 -21.53471 -20.02103 -19.32122 -17.20174 -16.22078 -16.02225 -15.98913 -14.92703 -14.44069 -14.34880 -14.07944 -13.68635 -13.45303 -12.91223 -12.57792 -12.06960 -11.68595 -11.55653 -11.36030 -11.15237 -10.90667 -10.60595 -10.58863 -10.34714 -10.24945 -9.81010 -9.30497 -9.19439 -8.96528 -8.40137 -8.09382 -6.95692 -6.00047 -4.01001 2.25152 3.19888 3.23592 3.33033 3.39388 3.42573 4.19799 4.45600 5.19002 5.31848 5.36111 5.37210 5.52972 5.60127 5.80145 5.86320 5.90155 5.92570 5.99269 6.02915 6.32839 6.44026 6.62140 6.76711 6.82879 7.08216 7.38917 7.44804 7.57192 7.58560 7.86450 8.00566 8.18141 8.33157 8.65182 9.07963 9.63360 11.10273 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.007172 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.882682 B = 3902.908205 C = 4522.044174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.017 3.983 4 C 0.070 3.930 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.115 3.885 16 C -0.203 4.203 17 C 0.063 3.937 18 N -0.313 5.313 19 N -0.490 5.490 20 H 0.432 0.568 21 C 0.059 3.941 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.000 1.000 30 H 0.028 0.972 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.179 0.821 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -8.023 10.294 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C -0.061 4.061 4 C -0.060 4.060 5 N -0.250 5.250 6 C 0.063 3.937 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.013 4.013 16 C -0.215 4.215 17 C -0.124 4.124 18 N -0.135 5.135 19 N -0.198 5.198 20 H 0.274 0.726 21 C -0.088 4.088 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.017 0.983 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.196 0.804 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.623 -8.767 10.729 13.950 hybrid contribution -1.436 1.665 -0.086 2.201 sum -3.060 -7.102 10.643 13.156 Atomic orbital electron populations 1.22669 0.82769 1.01719 0.99692 1.87915 1.18483 1.28892 1.95054 1.23579 0.97265 0.84330 1.00887 1.22147 0.89281 1.00820 0.93704 1.62272 1.59297 1.00639 1.02817 1.19799 0.93488 0.92730 0.87655 1.21200 1.25056 0.96596 1.11484 0.92015 1.24972 0.95310 0.98705 0.95588 1.69963 1.33379 1.35617 1.14931 0.86559 0.78893 0.84128 0.78175 1.20653 1.21450 1.19950 1.20614 0.97988 0.88396 0.94326 1.20186 0.97886 1.07282 0.96147 1.23826 0.96314 0.96200 0.96057 1.77222 1.09935 1.25205 1.01182 1.46237 1.16840 1.43828 1.12883 0.72552 1.22531 0.96253 0.96452 0.93568 0.94154 0.90470 0.94912 0.94650 0.90746 0.91929 0.89486 0.98273 0.95373 0.93031 0.91789 0.91644 0.80361 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.10 6.34 -35.23 -0.22 -6.32 16 3 C 0.02 0.30 5.68 37.15 0.21 0.51 16 4 C 0.07 1.31 5.42 -3.83 -0.02 1.29 16 5 N -0.53 -11.18 4.73 -237.52 -1.12 -12.31 16 6 C 0.19 4.75 4.35 -4.97 -0.02 4.73 16 7 C -0.50 -13.80 8.60 -34.44 -0.30 -14.10 16 8 H 0.06 1.68 7.10 -52.48 -0.37 1.31 16 9 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.12 2.14 5.08 -4.98 -0.03 2.11 16 16 C -0.20 -3.35 5.01 -105.05 -0.53 -3.88 16 17 C 0.06 1.01 11.96 -17.36 -0.21 0.80 16 18 N -0.31 -4.96 12.70 30.63 0.39 -4.57 16 19 N -0.49 -6.46 7.36 30.45 0.22 -6.23 16 20 H 0.43 4.10 8.96 -182.61 -1.64 2.46 16 21 C 0.06 0.84 9.86 -17.22 -0.17 0.67 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 1.55 5.79 -51.93 -0.30 1.25 16 27 H 0.06 1.08 5.36 -51.93 -0.28 0.80 16 28 H 0.09 1.75 7.06 -51.93 -0.37 1.39 16 29 H 0.00 -0.01 5.71 -51.93 -0.30 -0.30 16 30 H 0.03 0.77 7.99 -51.93 -0.41 0.36 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.20 5.19 -51.93 -0.27 0.93 16 33 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 34 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 35 H 0.18 2.24 6.85 -52.49 -0.36 1.88 16 LS Contribution 284.66 15.07 4.29 4.29 Total: -1.00 -30.74 284.66 -6.73 -37.47 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.96 Total: 1.74 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.04 Total: -4.94 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.23 Total: -48.60 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.22 Total: -6.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.74 -6.73 -37.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.108 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds