Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99928 * 2 1 4 4 C 1.52995 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47253 * 66.89892 * 4 3 2 6 6 C 1.46905 * 111.00054 * 53.35711 * 5 4 3 7 7 C 1.50696 * 109.47050 * 66.04830 * 6 5 4 8 8 H 1.08003 * 120.00455 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99907 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99732 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00059 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46945 * 90.00120 * 11 9 7 13 13 H 1.48496 * 109.47216 * 209.99647 * 11 9 7 14 14 H 1.48504 * 109.47292 * 330.00042 * 11 9 7 15 15 C 1.46896 * 111.00096 * 289.40204 * 5 4 3 16 16 C 1.50699 * 109.47131 * 298.00134 * 15 5 4 17 17 C 1.39877 * 126.03883 * 266.08446 * 16 15 5 18 18 N 1.30842 * 108.20026 * 179.81732 * 17 16 15 19 19 N 1.40089 * 108.20605 * 0.43460 * 18 17 16 20 20 H 0.96996 * 126.03735 * 179.69425 * 19 18 17 21 21 C 1.34948 * 107.92230 * 359.72506 * 19 18 17 22 22 H 1.08998 * 109.47155 * 59.99819 * 1 2 3 23 23 H 1.08995 * 109.46826 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47095 * 299.99841 * 1 2 3 25 25 H 1.08999 * 109.46766 * 60.00017 * 3 2 1 26 26 H 1.08998 * 109.46987 * 300.00194 * 3 2 1 27 27 H 1.09000 * 109.47099 * 306.89440 * 4 3 2 28 28 H 1.09004 * 109.46882 * 186.90111 * 4 3 2 29 29 H 1.08993 * 109.46914 * 306.04452 * 6 5 4 30 30 H 1.09000 * 109.46582 * 186.04510 * 6 5 4 31 31 H 0.97002 * 119.99500 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.47365 * 57.99867 * 15 5 4 33 33 H 1.09004 * 109.47282 * 178.00340 * 15 5 4 34 34 H 1.07992 * 125.89949 * 359.97438 * 17 16 15 35 35 H 1.08001 * 126.12362 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9801 0.6046 -1.2748 6 6 3.4414 1.3600 -2.4138 7 6 4.0352 2.7450 -2.4238 8 1 4.7418 3.0353 -1.6603 9 6 3.6757 3.6421 -3.4072 10 7 2.8149 3.2888 -4.3367 11 14 4.4112 5.3592 -3.4194 12 1 5.6592 5.3574 -4.2243 13 1 3.4389 6.3099 -4.0158 14 1 4.7203 5.7751 -2.0277 15 6 3.6128 -0.8150 -1.3636 16 6 4.3011 -1.5817 -0.2639 17 6 5.5249 -2.2510 -0.3688 18 7 5.7952 -2.7926 0.7912 19 7 4.7456 -2.4930 1.6694 20 1 4.6799 -2.7714 2.5962 21 6 3.8418 -1.7492 0.9978 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8492 0.5408 0.8210 28 1 3.9782 2.1731 0.1228 29 1 2.3575 1.4300 -2.3232 30 1 3.6963 0.8487 -3.3420 31 1 2.5623 3.9198 -5.0288 32 1 2.5329 -0.9182 -1.2575 33 1 3.9224 -1.2106 -2.3310 34 1 6.1414 -2.3085 -1.2535 35 1 2.9175 -1.3574 1.3962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611268765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = 20.074044 kcal Electronic energy + Delta-G solvation = -17652.834254 eV Core-core repulsion = 14880.369039 eV Total energy + Delta-G solvation = -2772.465215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01763 -39.59119 -37.29332 -34.68142 -32.59004 -31.69176 -30.44200 -28.55657 -27.23785 -25.36789 -24.71554 -22.73737 -21.56241 -20.67871 -18.48534 -18.21839 -17.47475 -17.32521 -16.64974 -15.93019 -15.75669 -15.26715 -15.16364 -14.91701 -14.46166 -13.95415 -13.71272 -13.13297 -13.04628 -12.95933 -12.70376 -12.62151 -12.45863 -12.28652 -11.79715 -11.68710 -11.55554 -11.15341 -10.58951 -10.43045 -10.32185 -9.37151 -8.64024 -8.12794 -6.22218 1.07875 1.43417 1.45026 1.55098 1.93225 2.18522 2.45138 2.94415 3.19161 3.70287 4.02898 4.21914 4.32656 4.41488 4.50297 4.53711 4.60583 4.65093 4.80944 4.85134 4.90973 5.00954 5.12523 5.25469 5.36424 5.45798 5.50681 5.75132 5.80161 6.16860 6.28348 6.54425 6.56816 6.80658 6.85395 6.96268 7.47408 8.96865 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.007172 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.882682 B = 3902.908205 C = 4522.044174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.030 3.970 4 C 0.072 3.928 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.264 1.264 15 C 0.124 3.876 16 C -0.229 4.229 17 C 0.053 3.947 18 N -0.328 5.328 19 N -0.472 5.472 20 H 0.450 0.550 21 C 0.080 3.920 22 H 0.024 0.976 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.071 0.929 29 H -0.018 1.018 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.187 0.813 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -8.060 12.366 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.309 6.309 3 C -0.048 4.048 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.554 4.554 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.188 1.188 15 C -0.005 4.005 16 C -0.241 4.241 17 C -0.133 4.133 18 N -0.152 5.152 19 N -0.182 5.182 20 H 0.297 0.703 21 C -0.069 4.069 22 H 0.042 0.958 23 H 0.120 0.880 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.000 1.000 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.203 0.797 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.679 -8.832 12.844 15.678 hybrid contribution -1.470 1.585 -0.667 2.263 sum -3.149 -7.247 12.177 14.516 Atomic orbital electron populations 1.22862 0.80957 1.03470 0.99924 1.87866 1.20316 1.27648 1.95064 1.23245 0.96347 0.85037 1.00144 1.22111 0.90333 1.00285 0.92958 1.62174 1.59485 1.01817 1.02520 1.19410 0.92360 0.92246 0.87977 1.21482 1.24886 0.97669 1.11403 0.92189 1.25814 0.95636 1.02775 0.95157 1.70088 1.34690 1.37070 1.15649 0.85500 0.78011 0.79203 0.78601 1.20312 1.20960 1.18828 1.20470 0.98195 0.86920 0.94872 1.20012 0.98694 1.08742 0.96606 1.24011 0.96440 0.96271 0.96626 1.77194 1.10939 1.25674 1.01365 1.46248 1.15737 1.42686 1.13517 0.70348 1.22687 0.96397 0.95136 0.92650 0.95772 0.88000 0.92803 0.92022 0.94741 0.89730 0.91048 1.00005 0.98781 0.92914 0.91867 0.92968 0.79652 0.78781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -11.72 6.34 -148.98 -0.94 -12.66 16 3 C 0.03 1.03 5.68 71.98 0.41 1.44 16 4 C 0.07 2.65 5.42 86.30 0.47 3.12 16 5 N -0.54 -23.07 4.73 -905.39 -4.28 -27.35 16 6 C 0.21 10.80 4.35 85.55 0.37 11.17 16 7 C -0.52 -28.78 8.60 25.60 0.22 -28.56 16 8 H 0.06 3.30 7.10 -2.91 -0.02 3.28 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 11 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 15 C 0.12 4.60 5.08 85.56 0.43 5.04 16 16 C -0.23 -7.25 5.01 -20.14 -0.10 -7.35 16 17 C 0.05 1.64 11.96 85.24 1.02 2.66 16 18 N -0.33 -9.78 12.70 -57.02 -0.72 -10.50 16 19 N -0.47 -11.05 7.36 -57.59 -0.42 -11.47 16 20 H 0.45 6.97 8.96 -213.33 -1.91 5.06 16 21 C 0.08 2.05 9.86 83.54 0.82 2.87 16 22 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.03 1.47 5.79 -2.39 -0.01 1.46 16 27 H 0.08 2.74 5.36 -2.39 -0.01 2.73 16 28 H 0.07 2.85 7.06 -2.39 -0.02 2.83 16 29 H -0.02 -0.97 5.71 -2.39 -0.01 -0.98 16 30 H -0.01 -0.35 7.99 -2.39 -0.02 -0.36 16 31 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.06 2.37 5.19 -2.39 -0.01 2.35 16 33 H 0.05 2.03 8.01 -2.38 -0.02 2.01 16 34 H 0.19 5.25 8.06 -2.91 -0.02 5.23 16 35 H 0.20 4.23 6.85 -2.91 -0.02 4.21 16 Total: -1.00 -66.43 284.66 0.49 -65.94 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.81 Total: 12.52 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 5.36 Total: -7.10 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.14 Total: -104.76 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.94 Total: -12.66 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.43 0.49 -65.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611268765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.014 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds