Wall clock time and date at job start Sun Mar 29 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99579 * 2 1 4 4 C 1.50704 * 109.46623 * 270.00348 * 3 2 1 5 5 H 1.07992 * 120.00556 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99651 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99794 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 119.99843 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47612 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47129 * 120.00199 * 8 6 4 11 11 H 1.48504 * 109.47102 * 239.99770 * 8 6 4 12 12 C 1.34767 * 120.00516 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00275 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99867 * 359.97438 * 12 2 1 15 15 H 1.08996 * 115.56723 * 325.78034 * 14 12 2 16 16 C 1.53543 * 117.52192 * 180.02562 * 14 12 2 17 17 H 1.08998 * 117.45186 * 359.75664 * 16 14 12 18 18 C 1.53059 * 116.09653 * 142.43784 * 16 14 12 19 19 C 1.53122 * 109.35382 * 89.38985 * 18 16 14 20 20 C 1.53331 * 108.38036 * 307.61609 * 19 18 16 21 21 O 1.42725 * 108.82756 * 71.91041 * 20 19 18 22 22 C 1.42007 * 115.40945 * 305.28303 * 21 20 19 23 23 H 1.08995 * 114.43149 * 166.24505 * 22 21 20 24 24 H 1.09008 * 109.47143 * 269.99530 * 1 2 3 25 25 H 1.08991 * 109.47788 * 29.99912 * 1 2 3 26 26 H 1.09000 * 109.46696 * 150.00667 * 1 2 3 27 27 H 1.09001 * 109.47250 * 29.99900 * 3 2 1 28 28 H 1.08994 * 109.47199 * 150.00313 * 3 2 1 29 29 H 0.97000 * 119.99550 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.49486 * 209.36244 * 18 16 14 31 31 H 1.08996 * 109.49494 * 329.41978 * 18 16 14 32 32 H 1.08997 * 109.68767 * 67.31440 * 19 18 16 33 33 H 1.09006 * 109.68352 * 187.86824 * 19 18 16 34 34 H 1.08996 * 109.56877 * 312.11487 * 20 19 18 35 35 H 1.09000 * 109.57762 * 191.71766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4484 1.7038 -1.4209 5 1 2.0979 1.0959 -2.2417 6 6 3.1266 2.8776 -1.6729 7 7 3.5539 3.6178 -0.6732 8 14 3.4384 3.4165 -3.4340 9 1 2.8614 2.4160 -4.3674 10 1 2.8013 4.7374 -3.6677 11 1 4.9011 3.5243 -3.6671 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 1 0.4465 -2.4732 0.5528 16 6 2.2101 -3.7674 -0.0005 17 1 3.2959 -3.6719 -0.0046 18 6 1.6526 -4.9205 0.8374 19 6 0.7129 -5.7670 -0.0258 20 6 -0.3209 -4.8362 -0.6707 21 8 0.3235 -4.0627 -1.6824 22 6 1.4642 -3.3319 -1.2566 23 1 2.0781 -2.9413 -2.0681 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5137 27 1 1.6083 2.0285 0.5138 28 1 3.1498 1.1386 0.5138 29 1 4.0307 4.4437 -0.8506 30 1 2.4745 -5.5403 1.1958 31 1 1.1021 -4.5190 1.6881 32 1 1.2850 -6.2741 -0.8027 33 1 0.2058 -6.5038 0.5974 34 1 -0.7374 -4.1724 0.0868 35 1 -1.1185 -5.4299 -1.1174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611551622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:17 Heat of formation + Delta-G solvation = -55.714151 kcal Electronic energy + Delta-G solvation = -17414.697797 eV Core-core repulsion = 14606.653409 eV Total energy + Delta-G solvation = -2808.044389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48743 -38.38606 -34.97042 -34.36150 -32.95194 -32.49943 -28.13633 -26.77067 -25.72125 -23.81261 -23.57517 -21.45834 -19.56333 -18.36746 -17.05703 -16.51317 -16.15660 -15.61215 -15.39332 -14.65121 -14.44563 -14.15168 -13.97424 -13.13230 -13.03346 -12.48710 -12.25624 -12.14756 -12.09538 -11.73649 -11.39887 -11.23219 -11.13558 -10.85857 -10.73673 -10.58084 -10.14579 -9.81672 -9.60286 -9.19540 -8.84444 -8.42668 -7.62444 -6.03220 -4.07872 3.09895 3.31113 3.38564 3.43254 3.61201 3.81534 4.08307 4.45319 4.68057 4.68985 4.72085 4.79222 4.86279 5.17664 5.29011 5.30492 5.39671 5.48822 5.60031 5.70694 5.74231 5.90906 5.95598 5.99419 6.09566 6.24774 6.26024 7.06217 7.14485 7.44887 7.55785 7.93483 8.24529 8.43407 8.91496 9.10751 9.57335 11.04943 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038624 B = 0.005764 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.759513 B = 4856.658902 C = 4979.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.536 3.464 13 O -0.542 6.542 14 C -0.215 4.215 15 H 0.119 0.881 16 C -0.154 4.154 17 H 0.126 0.874 18 C -0.091 4.091 19 C -0.157 4.157 20 C 0.053 3.947 21 O -0.344 6.344 22 C 0.074 3.926 23 H 0.148 0.852 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 -16.047 2.347 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.329 5.329 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.322 3.678 13 O -0.420 6.420 14 C -0.236 4.236 15 H 0.137 0.863 16 C -0.173 4.173 17 H 0.144 0.856 18 C -0.128 4.128 19 C -0.195 4.195 20 C -0.023 4.023 21 O -0.261 6.261 22 C 0.015 3.985 23 H 0.166 0.834 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.243 -15.828 2.207 17.982 hybrid contribution 0.106 0.557 -0.515 0.766 sum -8.136 -15.271 1.691 17.386 Atomic orbital electron populations 1.21630 0.81407 1.02707 1.00206 1.48057 1.06236 1.07596 1.70977 1.19319 0.92549 0.78021 0.97605 1.21479 1.36356 1.06264 0.92288 0.92359 1.24947 0.95350 0.96379 0.97488 1.69949 1.38488 1.14343 1.30681 0.86432 0.78068 0.78317 0.84555 1.19756 1.20950 1.20867 1.19234 0.87284 0.83916 0.77359 1.90656 1.13712 1.87038 1.50617 1.23205 1.02095 0.92159 1.06188 0.86344 1.23016 1.00307 0.93661 1.00301 0.85642 1.21169 0.99147 0.95359 0.97174 1.22192 0.98467 0.98374 1.00419 1.22740 0.94781 0.93177 0.91633 1.87663 1.42164 1.61258 1.35010 1.22660 0.89152 0.95000 0.91697 0.83437 0.93967 0.90743 0.92248 0.94952 0.93827 0.92780 0.90727 0.91260 0.90516 0.90604 0.92852 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 10.01 59.85 0.60 2.02 16 2 N -0.60 -13.21 2.86 -182.95 -0.52 -13.73 16 3 C 0.24 6.56 5.16 -5.19 -0.03 6.53 16 4 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 8 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.54 11.58 7.46 -10.99 -0.08 11.50 16 13 O -0.54 -13.94 15.85 5.56 0.09 -13.85 16 14 C -0.21 -3.43 4.00 -91.79 -0.37 -3.80 16 15 H 0.12 1.65 6.38 -51.93 -0.33 1.32 16 16 C -0.15 -2.16 5.79 -90.60 -0.52 -2.68 16 17 H 0.13 1.95 7.68 -51.93 -0.40 1.55 16 18 C -0.09 -0.95 5.95 -26.64 -0.16 -1.11 16 19 C -0.16 -1.40 6.09 -26.50 -0.16 -1.57 16 20 C 0.05 0.53 6.62 37.33 0.25 0.78 16 21 O -0.34 -4.70 10.77 -35.23 -0.38 -5.08 16 22 C 0.07 1.10 6.75 -27.32 -0.18 0.92 16 23 H 0.15 2.35 8.14 -51.93 -0.42 1.93 16 24 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 26 H 0.06 0.87 6.64 -51.93 -0.34 0.52 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.51 7.12 -51.93 -0.37 0.14 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 290.72 15.07 4.38 4.38 Total: -1.00 -33.31 290.72 -6.97 -40.28 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.17 Total: -1.64 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.08 Total: -1.27 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.21 Total: -39.95 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.29 Total: -18.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.31 -6.97 -40.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611551622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds