Wall clock time and date at job start Sun Mar 29 2020 22:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99579 * 2 1 4 4 C 1.50704 * 109.46623 * 270.00348 * 3 2 1 5 5 H 1.07992 * 120.00556 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99651 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99794 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 119.99843 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47612 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47129 * 120.00199 * 8 6 4 11 11 H 1.48504 * 109.47102 * 239.99770 * 8 6 4 12 12 C 1.34767 * 120.00516 * 180.02562 * 2 1 3 13 13 O 1.21281 * 120.00275 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99867 * 359.97438 * 12 2 1 15 15 H 1.08996 * 115.56723 * 325.78034 * 14 12 2 16 16 C 1.53543 * 117.52192 * 180.02562 * 14 12 2 17 17 H 1.08998 * 117.45186 * 359.75664 * 16 14 12 18 18 C 1.53059 * 116.09653 * 142.43784 * 16 14 12 19 19 C 1.53122 * 109.35382 * 89.38985 * 18 16 14 20 20 C 1.53331 * 108.38036 * 307.61609 * 19 18 16 21 21 O 1.42725 * 108.82756 * 71.91041 * 20 19 18 22 22 C 1.42007 * 115.40945 * 305.28303 * 21 20 19 23 23 H 1.08995 * 114.43149 * 166.24505 * 22 21 20 24 24 H 1.09008 * 109.47143 * 269.99530 * 1 2 3 25 25 H 1.08991 * 109.47788 * 29.99912 * 1 2 3 26 26 H 1.09000 * 109.46696 * 150.00667 * 1 2 3 27 27 H 1.09001 * 109.47250 * 29.99900 * 3 2 1 28 28 H 1.08994 * 109.47199 * 150.00313 * 3 2 1 29 29 H 0.97000 * 119.99550 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.49486 * 209.36244 * 18 16 14 31 31 H 1.08996 * 109.49494 * 329.41978 * 18 16 14 32 32 H 1.08997 * 109.68767 * 67.31440 * 19 18 16 33 33 H 1.09006 * 109.68352 * 187.86824 * 19 18 16 34 34 H 1.08996 * 109.56877 * 312.11487 * 20 19 18 35 35 H 1.09000 * 109.57762 * 191.71766 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4484 1.7038 -1.4209 5 1 2.0979 1.0959 -2.2417 6 6 3.1266 2.8776 -1.6729 7 7 3.5539 3.6178 -0.6732 8 14 3.4384 3.4165 -3.4340 9 1 2.8614 2.4160 -4.3674 10 1 2.8013 4.7374 -3.6677 11 1 4.9011 3.5243 -3.6671 12 6 2.1389 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 1 0.4465 -2.4732 0.5528 16 6 2.2101 -3.7674 -0.0005 17 1 3.2959 -3.6719 -0.0046 18 6 1.6526 -4.9205 0.8374 19 6 0.7129 -5.7670 -0.0258 20 6 -0.3209 -4.8362 -0.6707 21 8 0.3235 -4.0627 -1.6824 22 6 1.4642 -3.3319 -1.2566 23 1 2.0781 -2.9413 -2.0681 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5137 27 1 1.6083 2.0285 0.5138 28 1 3.1498 1.1386 0.5138 29 1 4.0307 4.4437 -0.8506 30 1 2.4745 -5.5403 1.1958 31 1 1.1021 -4.5190 1.6881 32 1 1.2850 -6.2741 -0.8027 33 1 0.2058 -6.5038 0.5974 34 1 -0.7374 -4.1724 0.0868 35 1 -1.1185 -5.4299 -1.1174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611551622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:16 Heat of formation + Delta-G solvation = -78.432117 kcal Electronic energy + Delta-G solvation = -17415.682922 eV Core-core repulsion = 14606.653409 eV Total energy + Delta-G solvation = -2809.029514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70625 -39.92420 -36.70802 -35.59749 -34.73150 -33.76042 -30.09507 -27.88158 -27.26393 -25.56587 -24.57325 -23.06403 -20.56274 -19.82068 -18.71461 -18.40075 -17.35906 -17.20709 -16.75252 -16.28028 -15.85176 -15.46133 -15.13680 -14.57221 -14.30849 -13.95747 -13.81553 -13.57545 -13.48108 -13.17243 -13.05191 -12.83353 -12.58413 -12.30727 -12.24602 -12.00701 -11.71558 -11.58511 -10.93652 -10.70636 -10.66921 -10.12886 -9.46896 -8.25213 -6.40402 1.35063 1.37431 1.49207 1.56337 2.20318 2.38903 2.67047 2.77831 3.04248 3.49170 3.56048 3.62794 3.93988 3.98773 4.09083 4.27926 4.39503 4.49733 4.65401 4.68785 4.77753 4.84356 4.90949 4.97791 5.05089 5.14363 5.18378 5.20463 5.31286 5.52810 5.79953 6.02488 6.17396 6.65615 6.73140 7.24194 7.41596 8.82300 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.038624 B = 0.005764 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.759513 B = 4856.658902 C = 4979.418292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.606 5.606 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.267 1.267 11 H -0.280 1.280 12 C 0.526 3.474 13 O -0.597 6.597 14 C -0.215 4.215 15 H 0.148 0.852 16 C -0.143 4.143 17 H 0.102 0.898 18 C -0.089 4.089 19 C -0.150 4.150 20 C 0.041 3.959 21 O -0.354 6.354 22 C 0.081 3.919 23 H 0.127 0.873 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.026 0.974 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 -17.746 1.925 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.192 1.192 10 H -0.192 1.192 11 H -0.206 1.206 12 C 0.315 3.685 13 O -0.479 6.479 14 C -0.236 4.236 15 H 0.166 0.834 16 C -0.162 4.162 17 H 0.120 0.880 18 C -0.126 4.126 19 C -0.187 4.187 20 C -0.034 4.034 21 O -0.272 6.272 22 C 0.022 3.978 23 H 0.145 0.855 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.305 -17.548 1.793 20.428 hybrid contribution 0.711 1.055 -0.343 1.318 sum -9.594 -16.492 1.450 19.135 Atomic orbital electron populations 1.21890 0.77955 1.03762 1.02471 1.48103 1.08417 1.06275 1.70856 1.18806 0.91101 0.80211 0.96237 1.21708 1.36990 1.06664 0.92877 0.93040 1.25878 0.94759 0.96309 1.02164 1.70059 1.38868 1.14824 1.33039 0.85334 0.77959 0.78437 0.78876 1.19238 1.19183 1.20581 1.20196 0.87051 0.85484 0.75796 1.90616 1.16351 1.88019 1.52911 1.23081 1.02955 0.89493 1.08117 0.83440 1.23113 0.99100 0.93809 1.00183 0.87964 1.21248 1.00073 0.94203 0.97067 1.22178 0.97856 0.98325 1.00358 1.23121 0.95368 0.93420 0.91534 1.87664 1.41573 1.61400 1.36533 1.22392 0.89796 0.94760 0.90896 0.85541 0.90996 0.91352 0.89525 0.95624 0.98346 0.92299 0.89541 0.90063 0.91005 0.87499 0.91916 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.62 10.01 127.77 1.28 3.90 16 2 N -0.61 -27.29 2.86 -851.13 -2.43 -29.72 16 3 C 0.26 14.46 5.16 85.63 0.44 14.90 16 4 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.46 5.46 84.66 0.46 0.93 16 7 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 8 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.53 23.28 7.46 87.66 0.65 23.93 16 13 O -0.60 -32.38 15.85 -3.03 -0.05 -32.42 16 14 C -0.22 -6.65 4.00 -11.55 -0.05 -6.69 16 15 H 0.15 3.64 6.38 -2.39 -0.02 3.63 16 16 C -0.14 -3.88 5.79 -10.78 -0.06 -3.94 16 17 H 0.10 3.28 7.68 -2.39 -0.02 3.26 16 18 C -0.09 -1.59 5.95 30.65 0.18 -1.41 16 19 C -0.15 -2.09 6.09 30.75 0.19 -1.90 16 20 C 0.04 0.66 6.62 72.09 0.48 1.14 16 21 O -0.35 -8.84 10.77 -148.97 -1.60 -10.45 16 22 C 0.08 2.35 6.75 30.21 0.20 2.56 16 23 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 24 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 26 H 0.09 2.32 6.64 -2.39 -0.02 2.30 16 27 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 28 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 0.92 7.12 -2.39 -0.02 0.90 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.45 290.72 3.32 -72.14 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.07 Total: 8.14 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.02 Total: 1.28 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -2.15 Total: -86.54 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.65 Total: -42.87 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.45 3.32 -72.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611551622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.292 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds