Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47068 * 2 1 4 4 C 1.36936 * 120.00328 * 264.10757 * 3 2 1 5 5 H 1.07996 * 119.99763 * 188.08547 * 4 3 2 6 6 C 1.38807 * 119.99780 * 8.08980 * 4 3 2 7 7 N 1.31614 * 120.00236 * 25.51463 * 6 4 3 8 8 Si 1.86802 * 119.99695 * 205.51387 * 6 4 3 9 9 H 1.48500 * 109.47075 * 84.98995 * 8 6 4 10 10 H 1.48503 * 109.47327 * 204.98161 * 8 6 4 11 11 H 1.48501 * 109.47540 * 324.98828 * 8 6 4 12 12 C 1.46502 * 119.99751 * 84.10286 * 3 2 1 13 13 C 1.52992 * 109.47530 * 270.00149 * 12 3 2 14 14 H 1.08999 * 110.47465 * 61.00257 * 13 12 3 15 15 C 1.54737 * 110.42662 * 183.45340 * 13 12 3 16 16 C 1.53883 * 101.88523 * 145.14137 * 15 13 12 17 17 C 1.52334 * 121.19640 * 128.90209 * 16 15 13 18 18 C 1.52323 * 121.22919 * 200.89258 * 16 15 13 19 19 C 1.50702 * 105.55462 * 344.94547 * 16 15 13 20 20 O 1.20823 * 125.26761 * 177.62224 * 19 16 15 21 21 O 1.34297 * 109.47484 * 357.63889 * 19 16 15 22 22 H 1.08997 * 109.47032 * 299.99697 * 1 2 3 23 23 H 1.08996 * 109.47071 * 59.99631 * 1 2 3 24 24 H 1.08996 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47032 * 240.00303 * 2 1 3 26 26 H 1.08996 * 109.47071 * 120.00369 * 2 1 3 27 27 H 0.97008 * 120.00268 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47017 * 149.99787 * 12 3 2 29 29 H 1.09003 * 109.46905 * 30.00359 * 12 3 2 30 30 H 1.09001 * 110.94498 * 263.28681 * 15 13 12 31 31 H 1.08998 * 110.94497 * 26.99036 * 15 13 12 32 32 H 1.09001 * 117.51302 * 218.09349 * 17 16 15 33 33 H 1.09000 * 117.52196 * 3.21364 * 17 16 15 34 34 H 1.08994 * 117.51755 * 356.83752 * 18 16 15 35 35 H 1.09001 * 117.51258 * 141.95853 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3614 1.9862 -1.1796 5 1 2.8425 2.9530 -1.1706 6 6 2.0906 1.3568 -2.3868 7 7 1.1096 0.4831 -2.4680 8 14 3.1186 1.7499 -3.8962 9 1 4.3421 0.9083 -3.8946 10 1 2.3270 1.4698 -5.1210 11 1 3.5041 3.1838 -3.8729 12 6 2.1396 2.1152 1.2621 13 6 0.8291 2.8490 1.5533 14 1 0.0081 2.1388 1.6511 15 6 0.9615 3.7015 2.8378 16 6 0.0891 4.9230 2.4988 17 6 -0.9977 5.4052 3.4511 18 6 0.2634 6.2462 3.2330 19 6 -0.1291 4.8627 1.0088 20 8 -0.8041 5.6354 0.3708 21 8 0.5425 3.8170 0.4999 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.9207 0.0430 -3.3115 28 1 2.9517 2.8383 1.1852 29 1 2.3516 1.4154 2.0704 30 1 0.5658 3.1680 3.7021 31 1 1.9974 3.9967 3.0045 32 1 -1.9271 5.7681 3.0121 33 1 -1.0985 4.8865 4.4044 34 1 0.9920 6.2806 4.0428 35 1 0.1633 7.1622 2.6506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763676728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -23.367720 kcal Electronic energy + Delta-G solvation = -17879.337652 eV Core-core repulsion = 15072.695910 eV Total energy + Delta-G solvation = -2806.641742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69824 -37.26792 -36.54768 -35.71378 -31.90093 -30.44770 -29.19616 -26.64229 -24.18774 -22.89196 -22.68304 -21.33020 -20.44658 -19.26042 -17.12641 -16.25879 -16.18174 -15.46919 -15.06570 -14.73539 -13.99718 -13.46485 -13.36909 -12.98487 -12.62911 -12.51440 -12.21159 -11.82840 -11.66095 -11.39050 -11.27698 -10.82340 -10.77129 -10.54541 -10.47665 -10.26137 -9.99128 -9.75564 -9.66044 -9.53846 -9.31975 -8.30218 -6.88640 -5.69847 -2.99973 2.34117 3.46696 3.54029 3.54928 3.68073 3.82037 4.10539 4.48657 4.59966 4.66323 4.74960 5.19078 5.33114 5.42188 5.44825 5.46125 5.64877 5.71524 5.78540 5.94631 5.95211 6.01821 6.23661 6.52731 6.58314 6.87071 7.01376 7.12329 7.46528 7.71977 7.82816 7.94886 8.14342 8.40958 9.29691 9.90487 10.33563 11.35249 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.007655 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.915835 B = 3656.724787 C = 4045.811884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.163 3.837 3 N -0.590 5.590 4 C -0.238 4.238 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.290 1.290 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.152 3.848 13 C 0.059 3.941 14 H 0.088 0.912 15 C -0.117 4.117 16 C -0.218 4.218 17 C -0.137 4.137 18 C -0.135 4.135 19 C 0.506 3.494 20 O -0.471 6.471 21 O -0.296 6.296 22 H 0.009 0.991 23 H 0.091 0.909 24 H 0.020 0.980 25 H 0.091 0.909 26 H 0.004 0.996 27 H 0.250 0.750 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 4.489 13.794 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 N -0.309 5.309 4 C -0.366 4.366 5 H 0.093 0.907 6 C -0.199 4.199 7 N -0.543 5.543 8 Si 0.726 3.274 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.023 3.977 13 C 0.001 3.999 14 H 0.106 0.894 15 C -0.155 4.155 16 C -0.220 4.220 17 C -0.174 4.174 18 C -0.172 4.172 19 C 0.347 3.653 20 O -0.357 6.357 21 O -0.210 6.210 22 H 0.028 0.972 23 H 0.110 0.890 24 H 0.039 0.961 25 H 0.109 0.891 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.853 4.672 13.080 13.915 hybrid contribution 0.212 0.218 -0.692 0.756 sum -0.641 4.890 12.388 13.333 Atomic orbital electron populations 1.22418 0.99354 0.98201 1.01009 1.20890 0.92425 0.84392 0.98457 1.44306 1.75104 1.10022 1.01507 1.19236 1.31177 1.02938 0.83296 0.90702 1.24687 0.97932 1.00098 0.97222 1.70157 1.27163 1.32175 1.24850 0.86367 0.80394 0.77839 0.82765 1.21720 1.22042 1.20754 1.21074 0.92289 0.94233 0.90136 1.25185 1.03467 0.89119 0.82165 0.89398 1.22554 1.00063 0.93718 0.99168 1.22428 1.05884 0.99370 0.94334 1.22878 0.93402 1.02197 0.98965 1.22822 1.00142 0.92862 1.01394 1.22026 0.75625 0.80361 0.87336 1.90624 1.34705 1.42369 1.68050 1.87415 1.66396 1.29795 1.37414 0.97235 0.88998 0.96116 0.89124 0.97819 0.93922 0.92436 0.91771 0.89358 0.89248 0.87865 0.87654 0.87584 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.59 37.16 0.36 -3.07 16 2 C 0.16 3.81 5.64 -4.04 -0.02 3.79 16 3 N -0.59 -14.14 2.51 -173.24 -0.43 -14.57 16 4 C -0.24 -6.46 9.15 -15.06 -0.14 -6.60 16 5 H 0.08 2.06 7.93 -52.49 -0.42 1.65 16 6 C 0.00 -0.07 4.89 -17.43 -0.09 -0.16 16 7 N -0.90 -25.46 8.61 55.49 0.48 -24.98 16 8 Si 0.90 22.21 29.62 -169.99 -5.04 17.18 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 C 0.15 2.85 5.42 -4.04 -0.02 2.83 16 13 C 0.06 1.05 3.67 -25.82 -0.09 0.95 16 14 H 0.09 1.60 6.01 -51.93 -0.31 1.29 16 15 C -0.12 -1.49 6.48 -25.36 -0.16 -1.66 16 16 C -0.22 -3.07 2.44 -155.89 -0.38 -3.45 16 17 C -0.14 -1.51 10.27 -27.00 -0.28 -1.79 16 18 C -0.14 -1.49 10.28 -27.01 -0.28 -1.77 16 19 C 0.51 9.99 8.34 36.01 0.30 10.29 16 20 O -0.47 -10.56 18.00 -18.38 -0.33 -10.89 16 21 O -0.30 -6.53 10.18 -39.07 -0.40 -6.93 16 22 H 0.01 0.18 6.02 -51.93 -0.31 -0.13 16 23 H 0.09 2.46 6.33 -51.93 -0.33 2.13 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.09 2.38 5.85 -51.93 -0.30 2.08 16 26 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 28 H 0.06 1.06 8.01 -51.92 -0.42 0.65 16 29 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 30 H 0.09 0.90 8.13 -51.93 -0.42 0.47 16 31 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 287.58 15.07 4.33 4.33 Total: -1.00 -31.47 287.58 -7.19 -38.67 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.00 Total: -2.16 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.81 Total: -0.64 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.04 Total: -39.55 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.73 Total: -17.82 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.04 Total: 17.18 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.47 -7.19 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763676728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.299 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds