Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47068 * 2 1 4 4 C 1.36936 * 120.00328 * 264.10757 * 3 2 1 5 5 H 1.07996 * 119.99763 * 188.08547 * 4 3 2 6 6 C 1.38807 * 119.99780 * 8.08980 * 4 3 2 7 7 N 1.31614 * 120.00236 * 25.51463 * 6 4 3 8 8 Si 1.86802 * 119.99695 * 205.51387 * 6 4 3 9 9 H 1.48500 * 109.47075 * 84.98995 * 8 6 4 10 10 H 1.48503 * 109.47327 * 204.98161 * 8 6 4 11 11 H 1.48501 * 109.47540 * 324.98828 * 8 6 4 12 12 C 1.46502 * 119.99751 * 84.10286 * 3 2 1 13 13 C 1.52992 * 109.47530 * 270.00149 * 12 3 2 14 14 H 1.08999 * 110.47465 * 61.00257 * 13 12 3 15 15 C 1.54737 * 110.42662 * 183.45340 * 13 12 3 16 16 C 1.53883 * 101.88523 * 145.14137 * 15 13 12 17 17 C 1.52334 * 121.19640 * 128.90209 * 16 15 13 18 18 C 1.52323 * 121.22919 * 200.89258 * 16 15 13 19 19 C 1.50702 * 105.55462 * 344.94547 * 16 15 13 20 20 O 1.20823 * 125.26761 * 177.62224 * 19 16 15 21 21 O 1.34297 * 109.47484 * 357.63889 * 19 16 15 22 22 H 1.08997 * 109.47032 * 299.99697 * 1 2 3 23 23 H 1.08996 * 109.47071 * 59.99631 * 1 2 3 24 24 H 1.08996 * 109.46916 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47032 * 240.00303 * 2 1 3 26 26 H 1.08996 * 109.47071 * 120.00369 * 2 1 3 27 27 H 0.97008 * 120.00268 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47017 * 149.99787 * 12 3 2 29 29 H 1.09003 * 109.46905 * 30.00359 * 12 3 2 30 30 H 1.09001 * 110.94498 * 263.28681 * 15 13 12 31 31 H 1.08998 * 110.94497 * 26.99036 * 15 13 12 32 32 H 1.09001 * 117.51302 * 218.09349 * 17 16 15 33 33 H 1.09000 * 117.52196 * 3.21364 * 17 16 15 34 34 H 1.08994 * 117.51755 * 356.83752 * 18 16 15 35 35 H 1.09001 * 117.51258 * 141.95853 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3614 1.9862 -1.1796 5 1 2.8425 2.9530 -1.1706 6 6 2.0906 1.3568 -2.3868 7 7 1.1096 0.4831 -2.4680 8 14 3.1186 1.7499 -3.8962 9 1 4.3421 0.9083 -3.8946 10 1 2.3270 1.4698 -5.1210 11 1 3.5041 3.1838 -3.8729 12 6 2.1396 2.1152 1.2621 13 6 0.8291 2.8490 1.5533 14 1 0.0081 2.1388 1.6511 15 6 0.9615 3.7015 2.8378 16 6 0.0891 4.9230 2.4988 17 6 -0.9977 5.4052 3.4511 18 6 0.2634 6.2462 3.2330 19 6 -0.1291 4.8627 1.0088 20 8 -0.8041 5.6354 0.3708 21 8 0.5425 3.8170 0.4999 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.9207 0.0430 -3.3115 28 1 2.9517 2.8383 1.1852 29 1 2.3516 1.4154 2.0704 30 1 0.5658 3.1680 3.7021 31 1 1.9974 3.9967 3.0045 32 1 -1.9271 5.7681 3.0121 33 1 -1.0985 4.8865 4.4044 34 1 0.9920 6.2806 4.0428 35 1 0.1633 7.1622 2.6506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763676728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -42.135054 kcal Electronic energy + Delta-G solvation = -17880.151465 eV Core-core repulsion = 15072.695910 eV Total energy + Delta-G solvation = -2807.455555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.05666 -38.85136 -37.71891 -37.45020 -33.67692 -32.10680 -30.87336 -28.13823 -25.94396 -24.47079 -23.51949 -22.72966 -22.21448 -20.61902 -18.86622 -17.77000 -17.67070 -17.06088 -16.54723 -16.12340 -15.66228 -15.14319 -14.90880 -14.50187 -13.97409 -13.82713 -13.64473 -13.58324 -13.15992 -12.83337 -12.70931 -12.50075 -12.42644 -12.37745 -11.87552 -11.79423 -11.54345 -11.41016 -11.22860 -11.06377 -10.89885 -10.31240 -8.81518 -7.78084 -5.06878 0.94642 1.46578 1.48190 1.54778 2.37391 2.56896 2.78219 2.95510 3.30005 3.40923 3.58073 3.76989 3.88615 4.14612 4.22590 4.40115 4.66864 4.68497 4.72599 4.79717 4.91719 4.92396 4.94637 5.03058 5.16227 5.17954 5.23383 5.32774 5.66549 5.83824 6.05011 6.19670 6.40559 6.47193 7.26086 7.97500 8.33203 9.24361 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.029814 B = 0.007655 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.915835 B = 3656.724787 C = 4045.811884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.165 3.835 3 N -0.607 5.607 4 C -0.236 4.236 5 H 0.063 0.937 6 C -0.056 4.056 7 N -0.917 5.917 8 Si 0.947 3.053 9 H -0.283 1.283 10 H -0.302 1.302 11 H -0.283 1.283 12 C 0.147 3.853 13 C 0.055 3.945 14 H 0.079 0.921 15 C -0.094 4.094 16 C -0.236 4.236 17 C -0.121 4.121 18 C -0.119 4.119 19 C 0.492 3.508 20 O -0.520 6.520 21 O -0.347 6.347 22 H 0.028 0.972 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.242 0.758 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 4.714 17.344 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.040 3.960 3 N -0.327 5.327 4 C -0.366 4.366 5 H 0.081 0.919 6 C -0.250 4.250 7 N -0.565 5.565 8 Si 0.777 3.223 9 H -0.210 1.210 10 H -0.229 1.229 11 H -0.209 1.209 12 C 0.020 3.980 13 C -0.002 4.002 14 H 0.097 0.903 15 C -0.132 4.132 16 C -0.238 4.238 17 C -0.157 4.157 18 C -0.155 4.155 19 C 0.336 3.664 20 O -0.409 6.409 21 O -0.263 6.263 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.131 4.903 16.678 17.384 hybrid contribution -0.013 0.191 -1.754 1.765 sum -0.144 5.094 14.923 15.770 Atomic orbital electron populations 1.22202 0.99162 0.98662 0.99648 1.20782 0.92547 0.84309 0.98355 1.44448 1.75383 1.10645 1.02267 1.19329 1.30114 1.02247 0.84883 0.91907 1.25274 0.99142 1.01144 0.99418 1.70328 1.28158 1.33369 1.24609 0.85565 0.79201 0.77400 0.80088 1.21015 1.22922 1.20925 1.21346 0.92824 0.94851 0.88996 1.25115 1.01996 0.89185 0.83886 0.90293 1.22538 1.01238 0.92049 0.97355 1.22346 1.09010 1.02103 0.90371 1.23101 0.92442 1.01189 0.98990 1.23043 1.00911 0.90663 1.00914 1.22965 0.74298 0.79055 0.90096 1.90568 1.36739 1.43640 1.69957 1.87341 1.66852 1.31348 1.40747 0.95309 0.93517 0.94671 0.92610 0.94319 0.94810 0.92396 0.87835 0.85418 0.87362 0.89150 0.83820 0.83850 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 9.59 71.98 0.69 -5.52 16 2 C 0.17 7.59 5.64 86.38 0.49 8.08 16 3 N -0.61 -28.80 2.51 -702.02 -1.76 -30.56 16 4 C -0.24 -13.03 9.15 84.03 0.77 -12.27 16 5 H 0.06 3.55 7.93 -2.91 -0.02 3.53 16 6 C -0.06 -3.17 4.89 84.86 0.41 -2.75 16 7 N -0.92 -53.83 8.61 21.65 0.19 -53.65 16 8 Si 0.95 46.99 29.62 68.60 2.03 49.03 16 9 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 11 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 12 C 0.15 5.17 5.42 86.38 0.47 5.64 16 13 C 0.06 1.85 3.67 31.18 0.11 1.96 16 14 H 0.08 2.73 6.01 -2.39 -0.01 2.72 16 15 C -0.09 -1.98 6.48 31.48 0.20 -1.78 16 16 C -0.24 -5.98 2.44 -53.07 -0.13 -6.11 16 17 C -0.12 -2.17 10.27 30.42 0.31 -1.86 16 18 C -0.12 -2.15 10.28 30.42 0.31 -1.83 16 19 C 0.49 19.61 8.34 71.24 0.59 20.20 16 20 O -0.52 -24.26 18.00 21.62 0.39 -23.87 16 21 O -0.35 -15.58 10.18 -52.41 -0.53 -16.11 16 22 H 0.03 1.14 6.02 -2.39 -0.01 1.13 16 23 H 0.05 2.55 6.33 -2.39 -0.02 2.54 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 2.97 5.85 -2.39 -0.01 2.95 16 26 H 0.04 1.50 7.98 -2.39 -0.02 1.48 16 27 H 0.24 14.07 8.31 -92.70 -0.77 13.30 16 28 H 0.06 2.03 8.01 -2.38 -0.02 2.01 16 29 H 0.10 2.83 7.95 -2.39 -0.02 2.81 16 30 H 0.13 1.73 8.13 -2.39 -0.02 1.71 16 31 H 0.11 1.89 7.92 -2.39 -0.02 1.88 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -73.43 287.58 5.63 -67.80 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.08 Total: 3.59 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 4.24 Total: 3.77 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -1.57 Total: -84.20 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.14 Total: -39.98 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.03 kcal Total: -73.43 5.63 -67.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763676728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.661 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds