Wall clock time and date at job start Sun Mar 29 2020 22:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99814 * 2 1 4 4 C 1.50701 * 109.47040 * 293.94630 * 3 2 1 5 5 H 1.07998 * 119.99994 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00456 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99970 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47221 * 269.99855 * 8 6 4 10 10 H 1.48497 * 109.47256 * 30.00115 * 8 6 4 11 11 H 1.48509 * 109.47120 * 150.00187 * 8 6 4 12 12 C 1.46898 * 110.99403 * 123.94922 * 2 1 3 13 13 C 1.53004 * 109.46963 * 160.29712 * 12 2 1 14 14 H 1.09002 * 110.38115 * 60.41893 * 13 12 2 15 15 C 1.54725 * 110.42812 * 182.93966 * 13 12 2 16 16 C 1.53888 * 101.88808 * 145.13911 * 15 13 12 17 17 C 1.52333 * 121.20048 * 128.90005 * 16 15 13 18 18 C 1.52311 * 121.23309 * 200.89529 * 16 15 13 19 19 C 1.50709 * 105.54719 * 344.94449 * 16 15 13 20 20 O 1.20827 * 125.25695 * 177.65805 * 19 16 15 21 21 O 1.34290 * 109.47889 * 357.64194 * 19 16 15 22 22 H 1.09001 * 109.46631 * 65.06447 * 1 2 3 23 23 H 1.08996 * 109.47442 * 185.05995 * 1 2 3 24 24 H 1.08998 * 109.47045 * 305.07015 * 1 2 3 25 25 H 1.09008 * 109.46819 * 173.95105 * 3 2 1 26 26 H 1.09000 * 109.47464 * 53.95057 * 3 2 1 27 27 H 0.97002 * 120.00775 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.47246 * 280.29038 * 12 2 1 29 29 H 1.08993 * 109.47533 * 40.29453 * 12 2 1 30 30 H 1.08997 * 110.94971 * 263.28219 * 15 13 12 31 31 H 1.09000 * 110.94717 * 26.98898 * 15 13 12 32 32 H 1.08996 * 117.51529 * 218.10144 * 17 16 15 33 33 H 1.09002 * 117.51751 * 3.21584 * 17 16 15 34 34 H 1.09003 * 117.51887 * 356.83209 * 18 16 15 35 35 H 1.09005 * 117.51919 * 141.90951 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0741 1.5114 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7136 4.0012 -0.6159 8 14 1.5829 4.1867 -3.1383 9 1 2.6590 3.9496 -4.1338 10 1 0.3045 3.6300 -3.6493 11 1 1.4315 5.6465 -2.9112 12 6 1.9953 -0.7659 1.1377 13 6 3.4460 -1.1635 0.8574 14 1 4.0630 -0.2757 0.7190 15 6 3.9995 -2.0347 2.0101 16 6 4.9258 -3.0057 1.2569 17 6 6.3690 -3.2195 1.6953 18 6 5.3379 -4.3384 1.8683 19 6 4.5467 -2.8803 -0.1963 20 8 5.0834 -3.4613 -1.1097 21 8 3.5201 -2.0234 -0.3190 22 1 -0.3632 0.4333 -0.9319 23 1 -0.3634 -1.0236 0.0906 24 1 -0.3633 0.5905 0.8411 25 1 3.0798 1.3444 0.1083 26 1 1.5610 1.9274 0.8309 27 1 2.9882 4.9174 -0.7779 28 1 1.9541 -0.1533 2.0384 29 1 1.3938 -1.6634 1.2809 30 1 4.5636 -1.4295 2.7197 31 1 3.1957 -2.5733 2.5121 32 1 7.1194 -3.3425 0.9145 33 1 6.7047 -2.7007 2.5932 34 1 4.9956 -4.5557 2.8802 35 1 5.4097 -5.1977 1.2015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763697299.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:55 Heat of formation + Delta-G solvation = -71.594618 kcal Electronic energy + Delta-G solvation = -17253.633126 eV Core-core repulsion = 14444.900109 eV Total energy + Delta-G solvation = -2808.733017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.16612 -39.03912 -37.86885 -37.61596 -34.70987 -32.46274 -29.48442 -28.64534 -26.18307 -24.92909 -23.53296 -23.11176 -22.09813 -20.59584 -18.66945 -17.92360 -17.81692 -17.03912 -16.61684 -16.19114 -15.92319 -15.49027 -15.32275 -14.81771 -14.01763 -13.86785 -13.83834 -13.74564 -13.33670 -13.06743 -12.86265 -12.56919 -12.45186 -12.42554 -12.30125 -12.02793 -11.56884 -11.51885 -11.26569 -11.10366 -11.01932 -10.60995 -8.97927 -8.22045 -6.30402 0.88461 1.38881 1.40841 1.51253 2.21619 2.39537 2.74434 2.86428 3.10861 3.18913 3.44941 3.54479 3.81484 4.01833 4.10338 4.18862 4.49761 4.61204 4.62193 4.66419 4.69284 4.78285 4.88983 4.92967 4.97483 5.08233 5.17549 5.18285 5.30049 5.63972 5.87009 6.06610 6.32499 6.40398 6.64583 6.85066 7.38941 8.88768 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.032145 B = 0.005691 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.835740 B = 4918.625742 C = 5129.813737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.558 5.558 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.963 3.037 9 H -0.278 1.278 10 H -0.266 1.266 11 H -0.278 1.278 12 C 0.056 3.944 13 C 0.089 3.911 14 H 0.073 0.927 15 C -0.094 4.094 16 C -0.236 4.236 17 C -0.127 4.127 18 C -0.112 4.112 19 C 0.499 3.501 20 O -0.509 6.509 21 O -0.347 6.347 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.018 0.982 25 H 0.008 0.992 26 H -0.029 1.029 27 H 0.265 0.735 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -13.556 11.158 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.282 5.282 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.203 1.203 12 C -0.072 4.072 13 C 0.034 3.966 14 H 0.091 0.909 15 C -0.131 4.131 16 C -0.238 4.238 17 C -0.164 4.164 18 C -0.148 4.148 19 C 0.342 3.658 20 O -0.397 6.397 21 O -0.263 6.263 22 H 0.069 0.931 23 H 0.098 0.902 24 H 0.036 0.964 25 H 0.026 0.974 26 H -0.011 1.011 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.203 -13.840 10.164 17.467 hybrid contribution -0.341 1.357 -0.529 1.496 sum 2.862 -12.483 9.635 16.026 Atomic orbital electron populations 1.22171 0.86984 1.00864 1.00328 1.61946 1.08558 1.15613 1.42099 1.19452 0.93931 0.83584 0.94950 1.21487 1.34778 0.97490 1.02659 0.92579 1.25818 0.95084 0.98014 1.00437 1.70044 1.39326 1.11928 1.35919 0.85471 0.78837 0.77513 0.79343 1.20365 1.19025 1.20321 1.22307 0.93250 0.98934 0.92677 1.23942 0.98955 0.91821 0.81926 0.90897 1.22512 0.99114 0.95629 0.95836 1.22305 1.03324 1.06265 0.91906 1.23124 0.87975 1.01492 1.03774 1.23061 0.99629 0.89134 1.03002 1.22748 0.76266 0.75976 0.90762 1.90602 1.52220 1.47955 1.48938 1.87223 1.46666 1.46244 1.46171 0.93050 0.90238 0.96375 0.97436 1.01101 0.92653 0.91491 0.88247 0.85981 0.86374 0.88900 0.84313 0.83858 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.31 127.69 1.19 2.87 16 2 N -0.56 -24.02 4.62 -927.04 -4.28 -28.30 16 3 C 0.21 10.89 4.55 85.56 0.39 11.28 16 4 C -0.53 -30.45 8.58 25.60 0.22 -30.23 16 5 H 0.06 3.26 7.10 -2.91 -0.02 3.24 16 6 C 0.00 0.26 5.46 84.65 0.46 0.73 16 7 N -0.93 -55.89 13.29 21.44 0.28 -55.61 16 8 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.06 1.80 4.67 86.31 0.40 2.20 16 13 C 0.09 2.78 3.57 31.18 0.11 2.89 16 14 H 0.07 2.64 6.86 -2.39 -0.02 2.62 16 15 C -0.09 -1.78 6.48 31.48 0.20 -1.58 16 16 C -0.24 -5.26 2.44 -53.07 -0.13 -5.39 16 17 C -0.13 -2.09 10.27 30.42 0.31 -1.78 16 18 C -0.11 -1.67 10.28 30.41 0.31 -1.35 16 19 C 0.50 17.42 8.34 71.24 0.59 18.01 16 20 O -0.51 -20.99 18.00 21.61 0.39 -20.61 16 21 O -0.35 -13.46 10.70 -52.34 -0.56 -14.02 16 22 H 0.05 2.13 7.01 -2.39 -0.02 2.12 16 23 H 0.08 2.42 7.85 -2.39 -0.02 2.40 16 24 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16 25 H 0.01 0.43 6.67 -2.38 -0.02 0.41 16 26 H -0.03 -1.59 8.07 -2.39 -0.02 -1.61 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.07 1.95 8.00 -2.38 -0.02 1.93 16 29 H 0.10 2.60 7.74 -2.39 -0.02 2.58 16 30 H 0.12 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.12 1.64 7.92 -2.39 -0.02 1.62 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -74.23 295.72 3.00 -71.23 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.07 Total: 2.31 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 4.07 Total: -2.35 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.99 Total: -83.91 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.17 Total: -34.63 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.23 3.00 -71.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763697299.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.363 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds