Wall clock time and date at job start Sun Mar 29 2020 22:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47050 * 120.00559 * 2 1 3 5 5 N 1.28008 * 120.00049 * 239.99552 * 4 2 1 6 6 N 1.40102 * 120.00348 * 175.11269 * 5 4 2 7 7 C 1.46377 * 119.32733 * 5.21368 * 6 5 4 8 8 C 1.53494 * 109.01399 * 150.82459 * 7 6 5 9 9 C 1.53241 * 108.43104 * 55.78823 * 8 7 6 10 10 N 1.46378 * 109.15436 * 304.38119 * 9 8 7 11 11 C 1.34137 * 119.33060 * 185.48340 * 6 5 4 12 12 O 1.21596 * 118.69659 * 0.52950 * 11 6 5 13 13 C 1.53000 * 109.46874 * 240.00270 * 2 1 3 14 14 C 1.50701 * 109.47265 * 65.00177 * 13 2 1 15 15 H 1.08001 * 119.99985 * 0.02562 * 14 13 2 16 16 C 1.37879 * 120.00188 * 179.97438 * 14 13 2 17 17 N 1.31514 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00160 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47287 * 120.00480 * 18 16 14 21 21 H 1.48504 * 109.47318 * 240.00370 * 18 16 14 22 22 H 1.09001 * 109.47000 * 59.99432 * 1 2 3 23 23 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47100 * 299.99707 * 1 2 3 25 25 H 1.07998 * 120.00730 * 60.00004 * 4 2 1 26 26 H 1.08997 * 109.52595 * 270.86289 * 7 6 5 27 27 H 1.09004 * 109.52941 * 31.05856 * 7 6 5 28 28 H 1.09003 * 109.80258 * 296.04063 * 8 7 6 29 29 H 1.09003 * 109.73163 * 175.49501 * 8 7 6 30 30 H 1.09002 * 109.52127 * 184.47833 * 9 8 7 31 31 H 1.09003 * 109.57736 * 64.32157 * 9 8 7 32 32 H 0.96999 * 119.32918 * 209.03870 * 10 9 8 33 33 H 1.09001 * 109.47437 * 184.99911 * 13 2 1 34 34 H 1.09004 * 109.47498 * 305.00170 * 13 2 1 35 35 H 0.97004 * 120.00239 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 2.7683 -0.0885 2.0730 6 7 3.1507 -0.7155 3.2661 7 6 2.7977 -2.1194 3.4833 8 6 3.8543 -2.7662 4.3896 9 6 3.9496 -1.9490 5.6823 10 7 4.2355 -0.5529 5.3480 11 6 3.8280 -0.0157 4.1884 12 8 4.0830 1.1519 3.9642 13 6 2.0399 -0.7212 -1.2493 14 6 1.6412 0.0572 -2.4766 15 1 1.0806 0.9747 -2.3756 16 6 1.9931 -0.4015 -3.7283 17 7 2.6762 -1.5186 -3.8513 18 14 1.4984 0.5629 -5.2496 19 1 0.7411 1.7740 -4.8434 20 1 2.7162 0.9685 -5.9964 21 1 0.6449 -0.2867 -6.1186 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7714 -1.7445 1.4013 26 1 1.8189 -2.1796 3.9591 27 1 2.7713 -2.6408 2.5264 28 1 4.8211 -2.7688 3.8861 29 1 3.5612 -3.7896 4.6242 30 1 4.7509 -2.3457 6.3058 31 1 3.0046 -2.0081 6.2224 32 1 4.7294 -0.0050 5.9779 33 1 3.1262 -0.7995 -1.2057 34 1 1.6052 -1.7198 -1.2953 35 1 2.9235 -1.8415 -4.7319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766030024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:30 Heat of formation + Delta-G solvation = 7.616811 kcal Electronic energy + Delta-G solvation = -16871.280862 eV Core-core repulsion = 14098.275461 eV Total energy + Delta-G solvation = -2773.005401 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53056 -37.24364 -36.31565 -34.86164 -32.53108 -31.49993 -30.30269 -26.98071 -26.35316 -24.24075 -23.20224 -21.83667 -19.39286 -18.53690 -17.82298 -17.15947 -16.34586 -16.10038 -15.92144 -14.52587 -14.44695 -14.22076 -13.94188 -13.39080 -13.14057 -12.66024 -12.53440 -11.89396 -11.72130 -11.61080 -11.33861 -11.02828 -10.90338 -10.71689 -10.39107 -10.05748 -9.95851 -9.56648 -9.43880 -9.21581 -9.05074 -8.35778 -8.22584 -6.00356 -4.01842 2.26208 2.44214 3.32988 3.38913 3.40971 3.45233 3.57657 4.31841 4.46865 4.48189 4.69702 4.94272 5.02814 5.15324 5.24494 5.36023 5.38823 5.43544 5.71246 5.92368 6.04546 6.14894 6.31795 6.58911 6.84028 6.93632 6.98386 7.01365 7.63481 7.68741 7.74349 7.98204 8.09800 8.39407 8.81159 9.03720 9.61999 11.11225 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042827 B = 0.004589 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.632095 B = 6100.728431 C = 6230.428089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 H 0.080 0.920 4 C 0.096 3.904 5 N -0.236 5.236 6 N -0.484 5.484 7 C 0.072 3.928 8 C -0.148 4.148 9 C 0.109 3.891 10 N -0.739 5.739 11 C 0.728 3.272 12 O -0.567 6.567 13 C 0.033 3.967 14 C -0.514 4.514 15 H 0.060 0.940 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.035 0.965 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -5.822 17.901 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.061 4.061 3 H 0.098 0.902 4 C -0.119 4.119 5 N -0.035 5.035 6 N -0.306 5.306 7 C -0.053 4.053 8 C -0.187 4.187 9 C -0.015 4.015 10 N -0.400 5.400 11 C 0.429 3.571 12 O -0.442 6.442 13 C -0.006 4.006 14 C -0.552 4.552 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.254 0.746 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.200 -4.602 17.874 18.458 hybrid contribution -0.274 -0.600 -0.631 0.913 sum -0.074 -5.202 17.243 18.011 Atomic orbital electron populations 1.21657 0.94269 1.01361 1.01156 1.20359 0.95366 1.00121 0.90239 0.90200 1.26755 0.91880 0.98057 0.95248 1.74672 1.12490 1.23545 0.92838 1.48012 1.57646 1.09260 1.15648 1.22081 0.98673 0.83257 1.01313 1.22205 1.00414 1.00106 0.95992 1.21534 1.01737 0.81388 0.96887 1.44959 1.62238 1.13114 1.19672 1.14827 0.78444 0.84205 0.79613 1.90970 1.60292 1.15109 1.77795 1.19136 0.96501 0.95516 0.89403 1.21221 1.34939 1.08424 0.90647 0.92150 1.25001 0.95175 0.95076 0.99153 1.69972 1.38943 1.21252 1.23405 0.86537 0.78281 0.80118 0.83088 1.19619 1.21086 1.21094 0.90695 0.93182 0.94600 0.87903 0.91080 0.89246 0.90145 0.88244 0.89733 0.91725 0.74565 0.96340 0.96121 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.98 37.16 0.33 -1.91 16 2 C -0.04 -0.81 2.75 -91.78 -0.25 -1.06 16 3 H 0.08 1.75 8.11 -51.93 -0.42 1.33 16 4 C 0.10 1.75 9.04 -13.87 -0.13 1.63 16 5 N -0.24 -4.71 10.80 32.67 0.35 -4.36 16 6 N -0.48 -8.06 3.82 -65.39 -0.25 -8.31 16 7 C 0.07 0.82 5.84 -3.85 -0.02 0.79 16 8 C -0.15 -1.18 6.21 -26.35 -0.16 -1.34 16 9 C 0.11 0.79 7.20 -3.98 -0.03 0.76 16 10 N -0.74 -8.35 5.58 -65.53 -0.37 -8.71 16 11 C 0.73 12.43 8.29 -88.06 -0.73 11.70 16 12 O -0.57 -12.35 17.33 5.28 0.09 -12.26 16 13 C 0.03 0.81 4.43 -27.88 -0.12 0.69 16 14 C -0.51 -14.02 8.41 -34.44 -0.29 -14.31 16 15 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 18 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.10 1.59 5.91 -52.49 -0.31 1.28 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.02 6.34 -51.93 -0.33 0.69 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.42 3.94 8.88 -40.82 -0.36 3.58 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 293.13 15.07 4.42 4.42 Total: -1.00 -34.86 293.13 -6.63 -41.49 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.09 Total: -1.39 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.50 Total: -1.56 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.47 Total: -47.08 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.86 -6.63 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766030024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.109 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds