Wall clock time and date at job start Sun Mar 29 2020 22:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.50694 * 109.47050 * 120.00559 * 2 1 3 5 5 N 1.28008 * 120.00049 * 239.99552 * 4 2 1 6 6 N 1.40102 * 120.00348 * 175.11269 * 5 4 2 7 7 C 1.46377 * 119.32733 * 5.21368 * 6 5 4 8 8 C 1.53494 * 109.01399 * 150.82459 * 7 6 5 9 9 C 1.53241 * 108.43104 * 55.78823 * 8 7 6 10 10 N 1.46378 * 109.15436 * 304.38119 * 9 8 7 11 11 C 1.34137 * 119.33060 * 185.48340 * 6 5 4 12 12 O 1.21596 * 118.69659 * 0.52950 * 11 6 5 13 13 C 1.53000 * 109.46874 * 240.00270 * 2 1 3 14 14 C 1.50701 * 109.47265 * 65.00177 * 13 2 1 15 15 H 1.08001 * 119.99985 * 0.02562 * 14 13 2 16 16 C 1.37879 * 120.00188 * 179.97438 * 14 13 2 17 17 N 1.31514 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00160 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47279 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47287 * 120.00480 * 18 16 14 21 21 H 1.48504 * 109.47318 * 240.00370 * 18 16 14 22 22 H 1.09001 * 109.47000 * 59.99432 * 1 2 3 23 23 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47100 * 299.99707 * 1 2 3 25 25 H 1.07998 * 120.00730 * 60.00004 * 4 2 1 26 26 H 1.08997 * 109.52595 * 270.86289 * 7 6 5 27 27 H 1.09004 * 109.52941 * 31.05856 * 7 6 5 28 28 H 1.09003 * 109.80258 * 296.04063 * 8 7 6 29 29 H 1.09003 * 109.73163 * 175.49501 * 8 7 6 30 30 H 1.09002 * 109.52127 * 184.47833 * 9 8 7 31 31 H 1.09003 * 109.57736 * 64.32157 * 9 8 7 32 32 H 0.96999 * 119.32918 * 209.03870 * 10 9 8 33 33 H 1.09001 * 109.47437 * 184.99911 * 13 2 1 34 34 H 1.09004 * 109.47498 * 305.00170 * 13 2 1 35 35 H 0.97004 * 120.00239 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 2.7683 -0.0885 2.0730 6 7 3.1507 -0.7155 3.2661 7 6 2.7977 -2.1194 3.4833 8 6 3.8543 -2.7662 4.3896 9 6 3.9496 -1.9490 5.6823 10 7 4.2355 -0.5529 5.3480 11 6 3.8280 -0.0157 4.1884 12 8 4.0830 1.1519 3.9642 13 6 2.0399 -0.7212 -1.2493 14 6 1.6412 0.0572 -2.4766 15 1 1.0806 0.9747 -2.3756 16 6 1.9931 -0.4015 -3.7283 17 7 2.6762 -1.5186 -3.8513 18 14 1.4984 0.5629 -5.2496 19 1 0.7411 1.7740 -4.8434 20 1 2.7162 0.9685 -5.9964 21 1 0.6449 -0.2867 -6.1186 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7714 -1.7445 1.4013 26 1 1.8189 -2.1796 3.9591 27 1 2.7713 -2.6408 2.5264 28 1 4.8211 -2.7688 3.8861 29 1 3.5612 -3.7896 4.6242 30 1 4.7509 -2.3457 6.3058 31 1 3.0046 -2.0081 6.2224 32 1 4.7294 -0.0050 5.9779 33 1 3.1262 -0.7995 -1.2057 34 1 1.6052 -1.7198 -1.2953 35 1 2.9235 -1.8415 -4.7319 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766030024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:29 Heat of formation + Delta-G solvation = -17.944147 kcal Electronic energy + Delta-G solvation = -16872.389268 eV Core-core repulsion = 14098.275461 eV Total energy + Delta-G solvation = -2774.113807 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.67670 -38.68045 -37.46993 -36.38139 -34.38236 -32.74453 -31.54142 -28.87385 -27.28085 -25.90078 -24.38003 -23.28236 -20.79644 -19.83183 -18.96631 -18.31545 -18.28951 -17.23867 -17.08323 -16.47652 -15.55715 -15.14915 -15.01540 -14.86639 -14.70671 -14.41099 -13.68770 -13.34272 -13.10766 -12.80421 -12.69624 -12.52531 -12.37778 -12.24788 -12.22280 -11.75762 -11.38376 -11.22297 -11.19382 -10.82930 -10.51472 -10.21211 -9.53100 -8.15440 -6.23801 0.96027 1.16402 1.43416 1.45320 1.57557 2.13593 2.45645 2.69238 3.19315 3.52575 3.71621 3.74207 3.97703 4.17650 4.26909 4.42894 4.48204 4.57806 4.58758 4.73695 4.78792 4.98318 5.08796 5.20890 5.26231 5.44897 5.48455 5.54053 5.73863 5.87546 5.98650 6.28379 6.52190 6.84754 6.90754 7.44350 7.56638 8.96817 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042827 B = 0.004589 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.632095 B = 6100.728431 C = 6230.428089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 H 0.057 0.943 4 C 0.101 3.899 5 N -0.279 5.279 6 N -0.487 5.487 7 C 0.061 3.939 8 C -0.142 4.142 9 C 0.104 3.896 10 N -0.722 5.722 11 C 0.716 3.284 12 O -0.630 6.630 13 C 0.041 3.959 14 C -0.529 4.529 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.133 0.867 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.425 0.575 33 H -0.018 1.018 34 H 0.012 0.988 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 -7.118 19.416 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 H 0.075 0.925 4 C -0.114 4.114 5 N -0.079 5.079 6 N -0.309 5.309 7 C -0.062 4.062 8 C -0.181 4.181 9 C -0.019 4.019 10 N -0.382 5.382 11 C 0.417 3.583 12 O -0.509 6.509 13 C 0.003 3.997 14 C -0.567 4.567 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.785 3.215 19 H -0.186 1.186 20 H -0.211 1.211 21 H -0.202 1.202 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.264 0.736 33 H 0.000 1.000 34 H 0.031 0.969 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.754 -5.951 19.436 20.340 hybrid contribution 0.072 -0.267 -0.992 1.030 sum -0.682 -6.218 18.444 19.476 Atomic orbital electron populations 1.21569 0.91889 1.02532 1.01605 1.20110 0.97313 0.98372 0.89605 0.92499 1.26501 0.91757 0.98971 0.94169 1.74449 1.12668 1.26318 0.94510 1.48030 1.57376 1.11190 1.14346 1.22497 1.01075 0.80231 1.02414 1.22277 0.98497 1.02044 0.95279 1.21942 1.04349 0.78514 0.97087 1.44951 1.60651 1.15025 1.17590 1.15261 0.78436 0.83700 0.80884 1.90915 1.62706 1.17897 1.79431 1.18957 0.94122 0.95421 0.91198 1.21629 1.34631 1.08677 0.91728 0.91736 1.25875 0.95172 0.96039 1.02466 1.70091 1.40193 1.22890 1.24256 0.85473 0.77939 0.79007 0.79094 1.18566 1.21114 1.20191 0.91957 0.91629 0.92366 0.85039 0.88902 0.89496 0.91631 0.84072 0.86001 0.89564 0.73600 0.99983 0.96940 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.98 71.98 0.65 -3.43 16 2 C -0.03 -1.36 2.75 -11.54 -0.03 -1.39 16 3 H 0.06 2.60 8.11 -2.39 -0.02 2.58 16 4 C 0.10 3.69 9.04 88.66 0.80 4.49 16 5 N -0.28 -11.33 10.80 -50.47 -0.54 -11.88 16 6 N -0.49 -16.00 3.82 -479.42 -1.83 -17.84 16 7 C 0.06 1.24 5.84 86.57 0.51 1.75 16 8 C -0.14 -1.75 6.21 30.84 0.19 -1.56 16 9 C 0.10 1.07 7.20 86.48 0.62 1.69 16 10 N -0.72 -14.95 5.58 -479.84 -2.68 -17.63 16 11 C 0.72 24.36 8.29 179.45 1.49 25.85 16 12 O -0.63 -28.39 17.33 -4.02 -0.07 -28.46 16 13 C 0.04 2.12 4.43 29.85 0.13 2.25 16 14 C -0.53 -29.31 8.41 25.60 0.22 -29.10 16 15 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 16 C 0.00 0.11 5.46 84.66 0.46 0.58 16 17 N -0.93 -56.00 13.29 21.45 0.28 -55.72 16 18 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H 0.06 2.30 6.95 -2.39 -0.02 2.29 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.13 3.92 5.91 -2.91 -0.02 3.90 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.82 6.34 -2.38 -0.02 1.80 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.42 7.35 8.88 -92.71 -0.82 6.52 16 33 H -0.02 -1.06 8.14 -2.39 -0.02 -1.07 16 34 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -79.39 293.13 2.48 -76.91 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.26 Total: 7.38 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.03 Total: 1.11 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.77 Total: -103.06 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.07 Total: -28.46 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -79.39 2.48 -76.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766030024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.968 kcal (2) G-P(sol) polarization free energy of solvation -79.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds