Wall clock time and date at job start Sun Mar 29 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 C 1.34771 * 120.00092 * 239.99940 * 12 2 1 15 15 O 1.21287 * 120.00010 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00122 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.70705 * 305.58516 * 16 14 12 18 18 C 1.53506 * 109.70629 * 66.20774 * 16 14 12 19 19 C 1.53243 * 108.16825 * 182.07431 * 18 16 14 20 20 C 1.50444 * 109.44320 * 313.18808 * 19 18 16 21 21 C 1.30685 * 122.49369 * 17.48488 * 20 19 18 22 22 O 1.35126 * 123.34794 * 359.54958 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 28 28 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 29 29 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 30 30 H 1.08998 * 109.72607 * 301.75322 * 18 16 14 31 31 H 1.08997 * 109.72557 * 62.42593 * 18 16 14 32 32 H 1.08995 * 109.47390 * 193.19853 * 19 18 16 33 33 H 1.09001 * 109.48615 * 73.18622 * 19 18 16 34 34 H 1.08001 * 118.74967 * 197.50693 * 20 19 18 35 35 H 1.08007 * 118.32311 * 179.56422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 1 2.4545 -1.1754 3.8590 18 6 4.2722 -1.8578 2.9077 19 6 4.7193 -2.5889 4.1781 20 6 5.0991 -1.5810 5.2285 21 6 4.7328 -0.3282 5.1644 22 8 3.9925 0.1785 4.1538 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 2.4157 -2.7377 0.9718 28 1 1.6238 -2.2852 2.5002 29 1 0.6903 -2.3002 0.9846 30 1 3.7747 -2.5576 2.2362 31 1 5.1387 -1.4224 2.4100 32 1 5.5793 -3.2189 3.9513 33 1 3.9023 -3.2085 4.5477 34 1 5.6975 -1.9051 6.0671 35 1 5.0374 0.3361 5.9596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777856985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:39 Heat of formation + Delta-G solvation = -53.854884 kcal Electronic energy + Delta-G solvation = -17723.663617 eV Core-core repulsion = 14915.699852 eV Total energy + Delta-G solvation = -2807.963765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40015 -38.42700 -35.39044 -33.95134 -32.94026 -31.52510 -29.24705 -26.45252 -25.81302 -25.20370 -23.61248 -21.42791 -19.02574 -18.56876 -16.99089 -16.55905 -16.27614 -15.77112 -15.10095 -14.64384 -14.35090 -13.92989 -13.81068 -13.03176 -12.82815 -12.74692 -12.58157 -12.24653 -11.63538 -11.56678 -11.17845 -11.08638 -10.93776 -10.75507 -10.70468 -10.44955 -10.25368 -10.17700 -9.19057 -8.88699 -8.44547 -8.36616 -7.64857 -6.08806 -4.16968 2.30698 3.16247 3.24787 3.25744 3.33706 3.37061 4.15771 4.38808 4.70951 4.80595 4.97714 5.09327 5.22029 5.23206 5.36377 5.60691 5.63228 5.66408 5.84821 5.97446 6.12760 6.19468 6.32314 6.53130 6.73915 6.79530 7.02484 7.36032 7.46995 7.66590 7.69179 7.99732 8.16312 8.45612 8.80827 8.99159 9.49580 10.96650 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.006476 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.593720 B = 4322.464847 C = 4570.627854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.588 5.588 13 C 0.082 3.918 14 C 0.511 3.489 15 O -0.531 6.531 16 C 0.074 3.926 17 H 0.090 0.910 18 C -0.156 4.156 19 C -0.077 4.077 20 C -0.294 4.294 21 C 0.061 3.939 22 O -0.297 6.297 23 H 0.095 0.905 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -8.173 12.352 15.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.321 5.321 13 C -0.062 4.062 14 C 0.295 3.705 15 O -0.407 6.407 16 C 0.014 3.986 17 H 0.108 0.892 18 C -0.194 4.194 19 C -0.114 4.114 20 C -0.313 4.313 21 C -0.003 4.003 22 O -0.209 6.209 23 H 0.113 0.887 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.473 -7.221 12.021 14.447 hybrid contribution 0.360 -0.872 -0.737 1.197 sum 3.833 -8.093 11.284 14.406 Atomic orbital electron populations 1.22103 0.98054 0.99429 1.00997 1.18998 0.90939 0.94593 0.79614 0.91774 1.21337 1.31833 1.13001 0.90196 0.92178 1.24898 0.94948 0.94977 0.98994 1.69890 1.36384 1.22576 1.23700 0.86427 0.78594 0.79560 0.82726 1.19832 1.20923 1.20894 1.48152 1.48804 1.11666 1.23446 1.21714 1.01918 0.83305 0.99260 1.19787 0.79803 0.87141 0.83739 1.90685 1.57244 1.16688 1.76095 1.22371 0.94778 0.89817 0.91598 0.89232 1.22328 1.00254 0.97978 0.98799 1.20323 1.01205 0.96794 0.93072 1.22480 1.09658 0.95697 1.03486 1.22115 0.92700 0.95397 0.90082 1.86028 1.59991 1.35017 1.39872 0.88674 0.96866 0.95018 0.92696 0.92857 0.92991 0.90491 0.88793 0.90104 0.90522 0.91207 0.86340 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 2 C 0.26 6.60 2.64 -69.08 -0.18 6.42 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.10 8.37 -34.44 -0.29 -14.39 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.59 -12.52 2.75 -175.25 -0.48 -13.00 16 13 C 0.08 1.32 8.20 59.85 0.49 1.81 16 14 C 0.51 11.05 7.10 -10.99 -0.08 10.97 16 15 O -0.53 -13.98 15.85 -14.16 -0.22 -14.20 16 16 C 0.07 1.23 2.42 -27.62 -0.07 1.16 16 17 H 0.09 1.28 7.11 -51.93 -0.37 0.91 16 18 C -0.16 -2.18 5.28 -26.34 -0.14 -2.32 16 19 C -0.08 -0.86 6.23 -27.88 -0.17 -1.03 16 20 C -0.29 -3.35 9.97 -36.06 -0.36 -3.71 16 21 C 0.06 0.79 10.88 29.10 0.32 1.10 16 22 O -0.30 -5.16 9.60 -36.79 -0.35 -5.52 16 23 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 27 H 0.05 0.82 7.04 -51.93 -0.37 0.45 16 28 H 0.05 0.66 6.12 -51.93 -0.32 0.34 16 29 H 0.08 1.25 6.43 -51.93 -0.33 0.91 16 30 H 0.09 1.22 5.30 -51.93 -0.28 0.95 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 281.99 15.07 4.25 4.25 Total: -1.00 -31.88 281.99 -6.20 -38.08 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.75 Total: 0.40 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.24 Total: -1.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.15 Total: -37.44 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.58 Total: -19.72 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.88 -6.20 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777856985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.771 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds