Wall clock time and date at job start Sun Mar 29 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 C 1.34771 * 120.00092 * 239.99940 * 12 2 1 15 15 O 1.21287 * 120.00010 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00122 * 179.97438 * 14 12 2 17 17 H 1.08997 * 109.70705 * 305.58516 * 16 14 12 18 18 C 1.53506 * 109.70629 * 66.20774 * 16 14 12 19 19 C 1.53243 * 108.16825 * 182.07431 * 18 16 14 20 20 C 1.50444 * 109.44320 * 313.18808 * 19 18 16 21 21 C 1.30685 * 122.49369 * 17.48488 * 20 19 18 22 22 O 1.35126 * 123.34794 * 359.54958 * 21 20 19 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 28 28 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 29 29 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 30 30 H 1.08998 * 109.72607 * 301.75322 * 18 16 14 31 31 H 1.08997 * 109.72557 * 62.42593 * 18 16 14 32 32 H 1.08995 * 109.47390 * 193.19853 * 19 18 16 33 33 H 1.09001 * 109.48615 * 73.18622 * 19 18 16 34 34 H 1.08001 * 118.74967 * 197.50693 * 20 19 18 35 35 H 1.08007 * 118.32311 * 179.56422 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 1 2.4545 -1.1754 3.8590 18 6 4.2722 -1.8578 2.9077 19 6 4.7193 -2.5889 4.1781 20 6 5.0991 -1.5810 5.2285 21 6 4.7328 -0.3282 5.1644 22 8 3.9925 0.1785 4.1538 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 2.4157 -2.7377 0.9718 28 1 1.6238 -2.2852 2.5002 29 1 0.6903 -2.3002 0.9846 30 1 3.7747 -2.5576 2.2362 31 1 5.1387 -1.4224 2.4100 32 1 5.5793 -3.2189 3.9513 33 1 3.9023 -3.2085 4.5477 34 1 5.6975 -1.9051 6.0671 35 1 5.0374 0.3361 5.9596 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777856985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:39 Heat of formation + Delta-G solvation = -74.349115 kcal Electronic energy + Delta-G solvation = -17724.552313 eV Core-core repulsion = 14915.699852 eV Total energy + Delta-G solvation = -2808.852461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.70498 -39.94641 -37.20603 -35.26626 -34.57505 -32.87941 -30.98140 -27.85396 -27.36128 -26.99381 -24.66575 -23.17158 -20.51524 -19.85526 -18.62776 -18.11604 -17.70714 -17.26760 -16.69638 -16.10653 -15.95858 -15.33258 -14.90566 -14.61641 -14.33887 -14.06998 -13.84220 -13.62640 -13.45487 -12.99367 -12.94940 -12.72347 -12.63716 -12.36736 -12.19980 -12.10685 -11.82942 -11.50558 -11.17774 -10.63435 -10.46201 -9.41033 -9.32956 -8.15506 -6.32346 1.38809 1.41054 1.42754 1.53784 1.64038 1.84021 2.41102 2.84110 3.12837 3.48071 3.61295 3.85226 4.05740 4.16985 4.36674 4.45158 4.64678 4.69661 4.75844 4.79640 4.87710 4.93680 5.02318 5.06369 5.14146 5.34061 5.44221 5.58138 5.64452 5.66603 6.00520 6.13608 6.58423 6.73854 6.76972 7.25057 7.42232 8.89451 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.006476 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.593720 B = 4322.464847 C = 4570.627854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.591 5.591 13 C 0.075 3.925 14 C 0.497 3.503 15 O -0.595 6.595 16 C 0.084 3.916 17 H 0.120 0.880 18 C -0.152 4.152 19 C -0.076 4.076 20 C -0.274 4.274 21 C 0.026 3.974 22 O -0.335 6.335 23 H 0.068 0.932 24 H 0.020 0.980 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -11.439 13.612 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.285 3.715 15 O -0.476 6.476 16 C 0.025 3.975 17 H 0.138 0.862 18 C -0.190 4.190 19 C -0.113 4.113 20 C -0.293 4.293 21 C -0.036 4.036 22 O -0.249 6.249 23 H 0.087 0.913 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.165 0.835 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.998 -10.547 13.312 17.448 hybrid contribution 0.233 0.150 -1.075 1.111 sum 4.231 -10.397 12.237 16.606 Atomic orbital electron populations 1.21886 0.96746 1.00476 1.00040 1.18609 0.91893 0.92155 0.81510 0.97675 1.21586 1.31911 1.13082 0.90899 0.91786 1.25768 0.95074 0.95640 1.02134 1.70038 1.37388 1.23932 1.24416 0.85370 0.78225 0.78452 0.78735 1.18689 1.19859 1.21376 1.48127 1.48399 1.13603 1.22060 1.22048 1.02213 0.80099 1.02323 1.20843 0.78882 0.86669 0.85134 1.90641 1.59494 1.19666 1.77797 1.22266 0.96384 0.89441 0.89445 0.86243 1.22338 0.98705 0.97297 1.00627 1.20447 1.02933 0.96726 0.91212 1.22862 1.07802 0.94931 1.03742 1.22595 0.93836 0.97009 0.90160 1.85980 1.61244 1.36389 1.41313 0.91301 0.96127 0.92781 0.92625 0.91595 0.88736 0.90398 0.87569 0.92716 0.88550 0.88521 0.83454 0.80354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.95 71.98 0.64 -5.78 16 2 C 0.26 13.74 2.64 44.25 0.12 13.86 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -29.14 8.37 25.60 0.21 -28.93 16 5 H 0.06 3.34 7.65 -2.91 -0.02 3.32 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 12 N -0.59 -25.21 2.75 -826.77 -2.28 -27.49 16 13 C 0.07 2.22 8.20 127.77 1.05 3.27 16 14 C 0.50 22.00 7.10 87.66 0.62 22.62 16 15 O -0.59 -33.32 15.85 15.80 0.25 -33.06 16 16 C 0.08 2.67 2.42 30.02 0.07 2.75 16 17 H 0.12 3.02 7.11 -2.39 -0.02 3.01 16 18 C -0.15 -3.89 5.28 30.85 0.16 -3.73 16 19 C -0.08 -1.36 6.23 29.85 0.19 -1.17 16 20 C -0.27 -5.21 9.97 25.89 0.26 -4.95 16 21 C 0.03 0.62 10.88 68.10 0.74 1.36 16 22 O -0.34 -11.59 9.60 -65.18 -0.63 -12.22 16 23 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 2.31 6.66 -2.38 -0.02 2.29 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.07 1.82 7.04 -2.39 -0.02 1.80 16 28 H 0.09 2.00 6.12 -2.39 -0.01 1.98 16 29 H 0.08 2.32 6.43 -2.38 -0.02 2.30 16 30 H 0.11 2.41 5.30 -2.39 -0.01 2.40 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -73.94 281.99 5.21 -68.73 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.08 Total: 11.69 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.52 Total: 0.47 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.03 Total: -80.60 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.38 Total: -45.28 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.94 5.21 -68.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777856985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.618 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds