Wall clock time and date at job start Sun Mar 29 2020 22:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47094 * 2 1 4 4 C 1.50704 * 109.46685 * 119.99744 * 2 1 3 5 5 H 1.08000 * 119.99897 * 120.00585 * 4 2 1 6 6 C 1.37880 * 119.99955 * 299.99430 * 4 2 1 7 7 N 1.31510 * 120.00158 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99837 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47256 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46932 * 120.00627 * 8 6 4 11 11 H 1.48503 * 109.47523 * 240.00390 * 8 6 4 12 12 N 1.46496 * 109.47229 * 239.99251 * 2 1 3 13 13 C 1.46502 * 120.00498 * 300.00353 * 12 2 1 14 14 C 1.34777 * 119.99684 * 120.00188 * 12 2 1 15 15 O 1.21283 * 120.00051 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00057 * 179.97438 * 14 12 2 17 17 H 1.09008 * 109.70471 * 54.42181 * 16 14 12 18 18 C 1.53500 * 109.71043 * 293.79432 * 16 14 12 19 19 C 1.53445 * 108.00228 * 177.72195 * 18 16 14 20 20 C 1.50443 * 109.34560 * 47.20619 * 19 18 16 21 21 C 1.30692 * 122.49291 * 342.05933 * 20 19 18 22 22 O 1.35128 * 123.34507 * 0.68597 * 21 20 19 23 23 H 1.09002 * 109.46870 * 60.00218 * 1 2 3 24 24 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47034 * 300.00663 * 1 2 3 26 26 H 0.97003 * 120.00095 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.47250 * 270.00136 * 13 12 2 28 28 H 1.09004 * 109.46387 * 30.00086 * 13 12 2 29 29 H 1.08997 * 109.47043 * 149.99536 * 13 12 2 30 30 H 1.08999 * 109.72694 * 297.57473 * 18 16 14 31 31 H 1.08997 * 109.72433 * 58.20218 * 18 16 14 32 32 H 1.09000 * 109.67414 * 287.15755 * 19 18 16 33 33 H 1.08992 * 109.37872 * 167.07958 * 19 18 16 34 34 H 1.08002 * 118.75663 * 162.34194 * 20 19 18 35 35 H 1.07998 * 118.32522 * 180.71184 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1481 -2.2855 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8167 12 7 2.0184 -0.6907 -1.1960 13 6 1.6645 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0832 15 8 3.0866 1.1252 -1.8911 16 6 3.2961 -0.7464 -3.3133 17 1 2.4559 -1.1768 -3.8585 18 6 4.2737 -1.8576 -2.9060 19 6 4.7158 -2.5906 -4.1794 20 6 5.1007 -1.5818 -5.2270 21 6 4.7343 -0.3289 -5.1633 22 8 3.9934 0.1779 -4.1533 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7082 1.1612 3.4844 27 1 2.4157 -2.7378 -0.9714 28 1 0.6904 -2.3002 -0.9845 29 1 1.6238 -2.2854 -2.5000 30 1 5.1397 -1.4214 -2.4081 31 1 3.7764 -2.5568 -2.2338 32 1 3.8969 -3.2063 -4.5515 33 1 5.5731 -3.2244 -3.9528 34 1 5.6987 -1.9062 -6.0658 35 1 5.0390 0.3351 -5.9587 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777856987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:41 Heat of formation + Delta-G solvation = -74.330786 kcal Electronic energy + Delta-G solvation = -17724.491313 eV Core-core repulsion = 14915.639646 eV Total energy + Delta-G solvation = -2808.851666 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.70275 -39.94527 -37.20623 -35.26124 -34.56953 -32.87875 -30.97965 -27.85227 -27.35987 -26.98772 -24.66895 -23.17038 -20.51595 -19.85919 -18.62785 -18.11483 -17.70606 -17.26486 -16.69360 -16.10808 -15.95605 -15.33230 -14.89770 -14.61669 -14.33874 -14.06969 -13.83976 -13.62909 -13.45447 -12.99382 -12.95009 -12.72324 -12.63769 -12.36852 -12.19918 -12.10646 -11.83006 -11.50541 -11.17790 -10.63363 -10.46118 -9.40981 -9.32936 -8.15506 -6.32339 1.38850 1.40994 1.42785 1.53771 1.64077 1.84068 2.41101 2.84156 3.12820 3.48004 3.61497 3.85369 4.05615 4.16904 4.36542 4.45073 4.64754 4.69723 4.75870 4.79716 4.87693 4.93483 5.02308 5.06327 5.14327 5.34080 5.44197 5.58211 5.64447 5.66592 6.00555 6.13634 6.58455 6.73857 6.76990 7.25071 7.42234 8.89439 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.036563 B = 0.006476 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.623802 B = 4322.392336 C = 4570.314248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.591 5.591 13 C 0.075 3.925 14 C 0.497 3.503 15 O -0.595 6.595 16 C 0.084 3.916 17 H 0.120 0.880 18 C -0.152 4.152 19 C -0.076 4.076 20 C -0.274 4.274 21 C 0.026 3.974 22 O -0.335 6.335 23 H 0.020 0.980 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.265 0.735 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -11.444 -13.614 18.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.285 3.715 15 O -0.476 6.476 16 C 0.024 3.976 17 H 0.138 0.862 18 C -0.190 4.190 19 C -0.113 4.113 20 C -0.293 4.293 21 C -0.036 4.036 22 O -0.249 6.249 23 H 0.039 0.961 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.165 0.835 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.996 -10.552 -13.315 17.453 hybrid contribution 0.233 0.152 1.076 1.111 sum 4.229 -10.400 -12.239 16.608 Atomic orbital electron populations 1.21887 0.96749 1.00478 1.00040 1.18607 0.91893 0.92151 0.81515 0.97678 1.21587 1.31915 1.13085 0.90898 0.91788 1.25768 0.95073 0.95639 1.02135 1.70035 1.37352 1.23961 1.24421 0.85371 0.78224 0.78453 0.78735 1.18691 1.21384 1.19851 1.48125 1.48409 1.13598 1.22057 1.22046 1.02212 0.80098 1.02323 1.20848 0.78883 0.86672 0.85133 1.90640 1.59500 1.19672 1.77785 1.22274 0.96383 0.89449 0.89447 0.86241 1.22372 0.98718 0.97275 1.00597 1.20483 1.02940 0.96695 0.91182 1.22867 1.07790 0.94919 1.03771 1.22595 0.93813 0.97022 0.90169 1.85982 1.61220 1.36388 1.41339 0.96122 0.92782 0.91304 0.92623 0.91594 0.90403 0.88735 0.92680 0.87592 0.88479 0.88571 0.83462 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.95 71.98 0.64 -5.78 16 2 C 0.26 13.74 2.64 44.25 0.12 13.86 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -29.15 8.37 25.60 0.21 -28.93 16 5 H 0.06 3.34 7.65 -2.91 -0.02 3.32 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 N -0.59 -25.21 2.75 -826.79 -2.28 -27.49 16 13 C 0.07 2.23 8.20 127.77 1.05 3.27 16 14 C 0.50 22.00 7.10 87.66 0.62 22.62 16 15 O -0.59 -33.32 15.85 15.81 0.25 -33.06 16 16 C 0.08 2.67 2.42 30.02 0.07 2.74 16 17 H 0.12 3.02 7.11 -2.38 -0.02 3.01 16 18 C -0.15 -3.89 5.29 30.91 0.16 -3.73 16 19 C -0.08 -1.35 6.23 29.92 0.19 -1.17 16 20 C -0.27 -5.21 9.97 25.88 0.26 -4.96 16 21 C 0.03 0.62 10.88 68.10 0.74 1.36 16 22 O -0.34 -11.59 9.60 -65.20 -0.63 -12.22 16 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 2.31 6.66 -2.39 -0.02 2.29 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 26 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.07 1.82 7.03 -2.39 -0.02 1.80 16 28 H 0.08 2.32 6.43 -2.39 -0.02 2.30 16 29 H 0.09 2.00 6.13 -2.39 -0.01 1.98 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.11 2.41 5.30 -2.39 -0.01 2.39 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -73.95 282.00 5.22 -68.74 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.08 Total: 11.69 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.52 Total: 0.46 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -2.03 Total: -80.60 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.38 Total: -45.28 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.95 5.22 -68.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777856987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.594 kcal (2) G-P(sol) polarization free energy of solvation -73.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds