Wall clock time and date at job start Sun Mar 29 2020 22:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.51354 * 325.43085 * 5 3 2 7 7 C 1.53004 * 117.44033 * 110.76990 * 5 3 2 8 8 H 1.09003 * 119.52506 * 355.91754 * 7 5 3 9 9 C 1.54371 * 118.12757 * 199.31682 * 7 5 3 10 10 N 1.48564 * 104.59893 * 272.77365 * 9 7 5 11 11 C 1.46897 * 111.00239 * 159.03749 * 10 9 7 12 12 C 1.53002 * 109.46855 * 54.58353 * 11 10 9 13 13 C 1.50706 * 109.47187 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99713 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00177 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47343 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47134 * 120.00420 * 17 15 13 20 20 H 1.48503 * 109.47246 * 240.00238 * 17 15 13 21 21 C 1.48561 * 104.21965 * 39.48218 * 10 9 7 22 22 C 1.52997 * 117.44580 * 180.02562 * 5 3 2 23 23 H 1.08992 * 119.52544 * 5.64654 * 22 5 3 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.09004 * 110.41404 * 153.99183 * 9 7 5 28 28 H 1.09000 * 110.51401 * 31.60117 * 9 7 5 29 29 H 1.09000 * 109.47445 * 174.57863 * 11 10 9 30 30 H 1.09001 * 109.47322 * 294.58732 * 11 10 9 31 31 H 1.09001 * 109.47240 * 299.99442 * 12 11 10 32 32 H 1.09003 * 109.47354 * 59.99991 * 12 11 10 33 33 H 0.96997 * 119.99783 * 180.02562 * 16 15 13 34 34 H 1.08990 * 110.41206 * 201.73703 * 21 10 9 35 35 H 1.09002 * 110.41155 * 79.29869 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0774 0.4908 0.5591 7 6 4.2457 1.7925 -1.2689 8 1 3.6412 2.0215 -2.1465 9 6 5.7404 1.4684 -1.4783 10 7 6.4624 2.5653 -0.7835 11 6 7.8384 2.1669 -0.4586 12 6 8.5470 1.6967 -1.7305 13 6 9.9590 1.2886 -1.3974 14 1 10.3154 1.3581 -0.3802 15 6 10.7957 0.8265 -2.3910 16 7 10.3618 0.7424 -3.6297 17 14 12.5460 0.3213 -1.9781 18 1 12.7860 0.5100 -0.5248 19 1 12.7451 -1.1074 -2.3308 20 1 13.4983 1.1591 -2.7504 21 6 5.6701 2.7989 0.4513 22 6 4.1994 2.6678 0.0012 23 1 3.5624 3.5473 0.0944 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 5.9838 1.4663 -2.5408 28 1 5.9890 0.5063 -1.0303 29 1 8.3736 3.0184 -0.0383 30 1 7.8196 1.3548 0.2682 31 1 8.0119 0.8452 -2.1509 32 1 8.5659 2.5088 -2.4574 33 1 10.9503 0.4169 -4.3286 34 1 5.8604 3.7985 0.8417 35 1 5.9060 2.0452 1.2026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794965015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:43 Heat of formation + Delta-G solvation = -51.749779 kcal Electronic energy + Delta-G solvation = -16686.101386 eV Core-core repulsion = 13878.228906 eV Total energy + Delta-G solvation = -2807.872480 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93442 -39.39429 -36.66023 -34.84421 -32.75199 -29.76610 -28.34667 -28.13030 -25.79671 -23.77919 -21.97779 -20.61979 -20.19190 -19.48032 -17.97086 -17.05817 -16.52556 -16.38160 -15.13517 -14.80105 -14.47833 -13.93519 -13.73669 -13.47549 -13.14822 -12.54147 -12.43404 -12.28693 -12.01746 -11.67940 -11.31157 -11.10205 -11.02830 -10.92169 -10.56587 -10.52200 -10.24760 -10.11513 -9.95808 -9.39635 -9.13189 -8.37811 -7.94981 -6.02232 -4.04828 1.89736 2.41466 3.30107 3.37720 3.41486 3.54138 4.28303 4.45116 4.49585 4.60851 4.82115 4.85650 4.93298 4.97538 5.17942 5.22589 5.29931 5.34180 5.63533 5.71733 5.91344 6.09845 6.11400 6.15399 6.19994 6.33932 6.41347 6.85989 7.30051 7.38300 7.57304 7.68377 7.82768 8.01958 8.39410 9.02117 9.59245 11.09154 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050289 B = 0.004113 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.648111 B = 6805.581632 C = 7036.655531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.498 3.502 4 O -0.507 6.507 5 C -0.150 4.150 6 H 0.132 0.868 7 C -0.124 4.124 8 H 0.123 0.877 9 C 0.066 3.934 10 N -0.509 5.509 11 C 0.051 3.949 12 C 0.023 3.977 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.058 3.942 22 C -0.125 4.125 23 H 0.129 0.871 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.018 0.982 32 H 0.026 0.974 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.559 -0.755 7.188 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.341 3.659 4 O -0.395 6.395 5 C -0.169 4.169 6 H 0.149 0.851 7 C -0.143 4.143 8 H 0.141 0.859 9 C -0.061 4.061 10 N -0.233 5.233 11 C -0.076 4.076 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.070 4.070 22 C -0.144 4.144 23 H 0.147 0.853 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.656 -0.021 6.683 17.947 hybrid contribution 0.660 -1.081 0.680 1.437 sum -15.997 -1.102 7.363 17.644 Atomic orbital electron populations 1.23285 0.76246 1.03751 1.02556 1.86511 1.23379 1.33173 1.83981 1.22558 0.90282 0.81199 0.71818 1.90655 1.66906 1.36442 1.45505 1.21933 0.87808 1.01248 1.05912 0.85061 1.23584 0.97437 1.01983 0.91265 0.85928 1.22646 0.87849 0.93734 1.01889 1.65678 1.02974 1.37566 1.17129 1.22537 0.86350 0.98294 1.00443 1.19165 0.94289 0.96551 0.91404 1.21213 0.97147 1.43252 0.94501 0.92675 1.24996 0.98575 0.95742 0.95012 1.69976 1.36110 1.46773 1.00327 0.86532 0.84784 0.78166 0.78483 1.19758 1.21031 1.20965 1.22716 0.89235 1.02010 0.93048 1.23505 0.97197 0.92376 1.01283 0.85311 0.91903 0.87993 0.91830 0.88439 0.93041 0.91491 0.95764 0.96329 0.95608 0.93012 0.89361 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.13 10.57 -39.25 -0.41 -4.54 16 3 C 0.50 6.51 7.74 36.01 0.28 6.79 16 4 O -0.51 -7.66 16.08 -18.75 -0.30 -7.96 16 5 C -0.15 -1.89 5.84 -91.77 -0.54 -2.42 16 6 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 7 C -0.12 -1.70 6.83 -89.21 -0.61 -2.31 16 8 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 9 C 0.07 1.10 4.91 -2.18 -0.01 1.09 16 10 N -0.51 -9.08 5.49 -229.99 -1.26 -10.34 16 11 C 0.05 1.05 5.00 -3.82 -0.02 1.03 16 12 C 0.02 0.59 4.69 -27.88 -0.13 0.46 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 14 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.06 0.83 6.29 -2.19 -0.01 0.82 16 22 C -0.12 -1.66 6.57 -89.22 -0.59 -2.25 16 23 H 0.13 1.69 7.80 -51.93 -0.41 1.28 16 24 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.10 1.73 7.67 -51.93 -0.40 1.33 16 28 H 0.05 0.86 7.99 -51.93 -0.42 0.45 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.02 0.49 7.88 -51.93 -0.41 0.08 16 31 H 0.02 0.49 6.84 -51.93 -0.36 0.13 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.63 7.82 -51.93 -0.41 0.23 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -31.13 296.45 -8.08 -39.21 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -5.31 Total: -2.63 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -0.97 Total: -8.81 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.53 Total: -36.16 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.72 Total: -12.50 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.13 -8.08 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794965015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.544 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds