Wall clock time and date at job start Sun Mar 29 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.51354 * 325.43085 * 5 3 2 7 7 C 1.53004 * 117.44033 * 110.76990 * 5 3 2 8 8 H 1.09003 * 119.52506 * 355.91754 * 7 5 3 9 9 C 1.54371 * 118.12757 * 199.31682 * 7 5 3 10 10 N 1.48564 * 104.59893 * 272.77365 * 9 7 5 11 11 C 1.46897 * 111.00239 * 159.03749 * 10 9 7 12 12 C 1.53002 * 109.46855 * 54.58353 * 11 10 9 13 13 C 1.50706 * 109.47187 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99713 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00177 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47343 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47134 * 120.00420 * 17 15 13 20 20 H 1.48503 * 109.47246 * 240.00238 * 17 15 13 21 21 C 1.48561 * 104.21965 * 39.48218 * 10 9 7 22 22 C 1.52997 * 117.44580 * 180.02562 * 5 3 2 23 23 H 1.08992 * 119.52544 * 5.64654 * 22 5 3 24 24 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 25 25 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 27 27 H 1.09004 * 110.41404 * 153.99183 * 9 7 5 28 28 H 1.09000 * 110.51401 * 31.60117 * 9 7 5 29 29 H 1.09000 * 109.47445 * 174.57863 * 11 10 9 30 30 H 1.09001 * 109.47322 * 294.58732 * 11 10 9 31 31 H 1.09001 * 109.47240 * 299.99442 * 12 11 10 32 32 H 1.09003 * 109.47354 * 59.99991 * 12 11 10 33 33 H 0.96997 * 119.99783 * 180.02562 * 16 15 13 34 34 H 1.08990 * 110.41206 * 201.73703 * 21 10 9 35 35 H 1.09002 * 110.41155 * 79.29869 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0774 0.4908 0.5591 7 6 4.2457 1.7925 -1.2689 8 1 3.6412 2.0215 -2.1465 9 6 5.7404 1.4684 -1.4783 10 7 6.4624 2.5653 -0.7835 11 6 7.8384 2.1669 -0.4586 12 6 8.5470 1.6967 -1.7305 13 6 9.9590 1.2886 -1.3974 14 1 10.3154 1.3581 -0.3802 15 6 10.7957 0.8265 -2.3910 16 7 10.3618 0.7424 -3.6297 17 14 12.5460 0.3213 -1.9781 18 1 12.7860 0.5100 -0.5248 19 1 12.7451 -1.1074 -2.3308 20 1 13.4983 1.1591 -2.7504 21 6 5.6701 2.7989 0.4513 22 6 4.1994 2.6678 0.0012 23 1 3.5624 3.5473 0.0944 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 5.9838 1.4663 -2.5408 28 1 5.9890 0.5063 -1.0303 29 1 8.3736 3.0184 -0.0383 30 1 7.8196 1.3548 0.2682 31 1 8.0119 0.8452 -2.1509 32 1 8.5659 2.5088 -2.4574 33 1 10.9503 0.4169 -4.3286 34 1 5.8604 3.7985 0.8417 35 1 5.9060 2.0452 1.2026 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794965015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:42 Heat of formation + Delta-G solvation = -71.594402 kcal Electronic energy + Delta-G solvation = -16686.961914 eV Core-core repulsion = 13878.228906 eV Total energy + Delta-G solvation = -2808.733008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98428 -40.54216 -37.67416 -36.38414 -34.69379 -31.50294 -29.49774 -29.14012 -27.29964 -25.31352 -23.44237 -21.90022 -21.30564 -20.91100 -18.97586 -18.53767 -18.01484 -17.41570 -16.52265 -16.43620 -16.10808 -15.17016 -15.03656 -14.47176 -14.31893 -14.18939 -13.86827 -13.59871 -13.26531 -13.05118 -12.90151 -12.68562 -12.50599 -12.33850 -11.86725 -11.84572 -11.64798 -11.42302 -11.34560 -11.26031 -11.07306 -10.54890 -9.36716 -8.19077 -6.30087 0.87037 1.41820 1.42377 1.51520 1.55415 2.41472 2.47265 3.06717 3.14820 3.41729 3.49558 3.68624 3.94028 4.00170 4.15497 4.27995 4.31127 4.44237 4.48154 4.56728 4.62957 4.68656 4.81100 4.90056 5.03358 5.03870 5.12286 5.25289 5.46608 5.62311 5.79495 5.90872 6.09870 6.30217 6.60412 6.87001 7.39165 8.93085 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.050289 B = 0.004113 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.648111 B = 6805.581632 C = 7036.655531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.502 3.498 4 O -0.530 6.530 5 C -0.135 4.135 6 H 0.144 0.856 7 C -0.127 4.127 8 H 0.130 0.870 9 C 0.067 3.933 10 N -0.524 5.524 11 C 0.067 3.933 12 C 0.031 3.969 13 C -0.543 4.543 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.059 3.941 22 C -0.118 4.118 23 H 0.135 0.865 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.000 1.000 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 -1.235 8.691 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.347 3.653 4 O -0.420 6.420 5 C -0.154 4.154 6 H 0.162 0.838 7 C -0.146 4.146 8 H 0.147 0.853 9 C -0.060 4.060 10 N -0.249 5.249 11 C -0.060 4.060 12 C -0.006 4.006 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.068 4.068 22 C -0.137 4.137 23 H 0.153 0.847 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.060 -0.508 8.202 18.936 hybrid contribution 0.685 -0.952 0.188 1.188 sum -16.375 -1.459 8.390 18.457 Atomic orbital electron populations 1.23619 0.74226 1.05936 1.02775 1.86497 1.25367 1.32236 1.83429 1.22521 0.90261 0.81309 0.71252 1.90649 1.67393 1.37236 1.46676 1.21915 0.87905 1.01080 1.04549 0.83791 1.23399 0.95865 1.03122 0.92193 0.85259 1.22524 0.89759 0.93299 1.00443 1.65604 1.02161 1.37876 1.19229 1.22176 0.87789 0.98323 0.97722 1.18991 0.94128 0.94637 0.92890 1.21656 0.98398 1.43223 0.94896 0.92062 1.25948 1.03281 0.95647 0.94797 1.70108 1.37897 1.47646 1.01460 0.85392 0.78992 0.77827 0.78776 1.18508 1.20392 1.20523 1.22765 0.89222 1.03139 0.91665 1.23454 0.96690 0.93087 1.00475 0.84708 0.91524 0.84906 0.91824 0.90671 0.93450 0.91339 0.95156 0.98182 0.98967 0.92787 0.87979 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.64 10.57 -51.40 -0.54 -8.19 16 3 C 0.50 12.24 7.74 71.24 0.55 12.79 16 4 O -0.53 -15.17 16.08 21.96 0.35 -14.81 16 5 C -0.14 -3.16 5.84 -11.54 -0.07 -3.23 16 6 H 0.14 3.02 8.14 -2.39 -0.02 3.01 16 7 C -0.13 -3.38 6.83 -9.88 -0.07 -3.45 16 8 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 9 C 0.07 2.25 4.91 86.45 0.42 2.67 16 10 N -0.52 -18.55 5.49 -881.54 -4.84 -23.38 16 11 C 0.07 2.78 5.00 86.30 0.43 3.21 16 12 C 0.03 1.62 4.69 29.85 0.14 1.76 16 13 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 0.07 5.46 84.65 0.46 0.53 16 16 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 21 C 0.06 1.60 6.29 86.44 0.54 2.14 16 22 C -0.12 -2.94 6.57 -9.89 -0.06 -3.01 16 23 H 0.14 3.26 7.80 -2.39 -0.02 3.25 16 24 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 27 H 0.07 2.80 7.67 -2.38 -0.02 2.78 16 28 H 0.05 1.60 7.99 -2.39 -0.02 1.58 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.03 1.20 7.88 -2.39 -0.02 1.18 16 31 H 0.00 -0.01 6.84 -2.39 -0.02 -0.02 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.06 1.43 7.82 -2.39 -0.02 1.41 16 Total: -1.00 -66.62 296.45 2.13 -64.49 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.06 Total: 7.48 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.78 Total: -15.40 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -4.55 Total: -79.51 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.19 Total: -23.00 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.62 2.13 -64.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794965015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.100 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds