Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47011 * 2 1 4 4 C 1.50700 * 109.46824 * 119.99942 * 2 1 3 5 5 N 1.29942 * 126.28944 * 300.02515 * 4 2 1 6 6 O 1.21306 * 110.25137 * 179.97438 * 5 4 2 7 7 C 1.33645 * 109.81154 * 359.97438 * 6 5 4 8 8 C 1.50691 * 126.55129 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47030 * 164.95516 * 8 7 6 10 10 N 1.46903 * 109.47146 * 44.95762 * 8 7 6 11 11 C 1.53001 * 109.47348 * 284.95879 * 8 7 6 12 12 C 1.52995 * 109.47342 * 185.00152 * 11 8 7 13 13 C 1.50700 * 109.47221 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99896 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99794 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46971 * 60.00117 * 17 15 13 19 19 H 1.48498 * 109.46713 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46982 * 299.99610 * 17 15 13 21 21 N 1.31138 * 106.89453 * 0.02562 * 7 6 5 22 22 H 1.09003 * 109.47264 * 299.99888 * 1 2 3 23 23 H 1.08998 * 109.46913 * 59.99712 * 1 2 3 24 24 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47264 * 240.00112 * 2 1 3 26 26 H 1.09003 * 109.47471 * 60.00238 * 3 2 1 27 27 H 1.09000 * 109.47058 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47517 * 299.99918 * 3 2 1 29 29 H 1.00895 * 111.00401 * 299.99865 * 10 8 7 30 30 H 1.00904 * 110.99917 * 63.95430 * 10 8 7 31 31 H 1.09002 * 109.46925 * 304.99923 * 11 8 7 32 32 H 1.08998 * 109.47082 * 64.99434 * 11 8 7 33 33 H 1.09004 * 109.47430 * 299.99891 * 12 11 8 34 34 H 1.09006 * 109.47321 * 59.99733 * 12 11 8 35 35 H 0.97003 * 119.99314 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7945 -0.3749 2.4631 6 8 2.3407 -1.1482 3.2216 7 6 2.9984 -2.0789 2.5235 8 6 3.8044 -3.2207 3.0870 9 1 3.9953 -3.9528 2.3023 10 7 3.0552 -3.8571 4.1787 11 6 5.1351 -2.6896 3.6237 12 6 6.0048 -3.8621 4.0817 13 6 7.3152 -3.3389 4.6109 14 1 7.5086 -2.2764 4.6193 15 6 8.2677 -4.2168 5.0834 16 7 8.0324 -5.5106 5.0726 17 14 9.8924 -3.5683 5.7387 18 1 9.6367 -2.6635 6.8882 19 1 10.7363 -4.7063 6.1833 20 1 10.5952 -2.8195 4.6661 21 7 2.8083 -1.8087 1.2544 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 2.8656 -3.1985 4.9192 30 1 2.2015 -4.2727 3.8371 31 1 5.6512 -2.1403 2.8363 32 1 4.9475 -2.0251 4.4671 33 1 5.4888 -4.4114 4.8692 34 1 6.1924 -4.5265 3.2382 35 1 8.7026 -6.1282 5.4047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822644041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = 40.960114 kcal Electronic energy + Delta-G solvation = -16782.504469 eV Core-core repulsion = 14010.944942 eV Total energy + Delta-G solvation = -2771.559527 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.47369 -36.93092 -36.71245 -34.31381 -33.01429 -31.16659 -30.27020 -27.49301 -26.53540 -24.61339 -24.15668 -22.50069 -20.60649 -19.58311 -17.89656 -17.50841 -16.30067 -15.97419 -15.23310 -15.17968 -14.45823 -14.23976 -14.03479 -13.67691 -12.62275 -12.54071 -12.45314 -12.11347 -11.91696 -11.83111 -11.72061 -11.32344 -11.24346 -10.90872 -10.88467 -10.70780 -10.58018 -9.98475 -9.82512 -9.36508 -9.03990 -8.82436 -8.27858 -5.94995 -3.97248 1.23787 2.30184 2.93870 3.36472 3.40897 3.43302 3.57800 4.06286 4.49554 4.64495 4.74557 4.77544 4.80808 5.20519 5.30952 5.40065 5.42091 5.49759 5.51804 5.59449 5.73754 5.85120 5.89345 5.93468 6.11324 6.40383 6.56896 7.00352 7.16478 7.51125 7.74276 7.92079 8.09074 8.26090 8.45772 9.09790 9.65977 11.15921 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042365 B = 0.004495 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.759887 B = 6227.019883 C = 6575.460982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.003 4.003 3 C -0.145 4.145 4 C 0.170 3.830 5 N -0.389 5.389 6 O 0.071 5.929 7 C 0.160 3.840 8 C 0.185 3.815 9 H 0.124 0.876 10 N -0.812 5.812 11 C -0.102 4.102 12 C 0.032 3.968 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 N -0.486 5.486 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.349 0.651 30 H 0.340 0.660 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.374 8.963 -8.247 18.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.203 4.203 4 C -0.103 4.103 5 N -0.098 5.098 6 O 0.014 5.986 7 C -0.063 4.063 8 C 0.070 3.930 9 H 0.142 0.858 10 N -0.341 5.341 11 C -0.140 4.140 12 C -0.005 4.005 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 N -0.220 5.220 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.106 8.925 -8.307 18.645 hybrid contribution 0.297 0.928 0.199 0.994 sum -13.809 9.852 -8.108 18.801 Atomic orbital electron populations 1.21837 0.93054 1.02459 1.02810 1.19528 0.96233 0.95397 0.91184 1.21844 1.01672 0.94002 1.02783 1.25846 0.96799 0.93109 0.94545 1.74521 1.18372 1.14085 1.02833 1.85255 1.48097 1.29780 1.35433 1.31214 0.94247 0.94573 0.86291 1.20840 0.92039 0.86243 0.93845 0.85807 1.58822 1.27347 1.37245 1.10670 1.21840 0.91080 1.01425 0.99692 1.19017 0.92788 0.91597 0.97119 1.21210 1.00692 0.92985 1.41358 0.92971 1.24978 0.98421 0.94863 0.95969 1.69960 1.34852 1.01422 1.46888 0.86698 0.83836 0.78328 0.79355 1.20297 1.21306 1.20352 1.71937 1.17099 1.14339 1.18603 0.91935 0.91159 0.92370 0.88126 0.91920 0.92164 0.91155 0.83702 0.84747 0.92353 0.92426 0.94446 0.96569 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.14 -1.38 9.17 37.15 0.34 -1.04 16 4 C 0.17 2.50 6.72 -156.38 -1.05 1.45 16 5 N -0.39 -6.07 12.16 30.90 0.38 -5.69 16 6 O 0.07 1.11 11.29 18.09 0.20 1.32 16 7 C 0.16 2.52 7.31 -13.05 -0.10 2.43 16 8 C 0.19 2.98 3.29 -68.87 -0.23 2.75 16 9 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 10 N -0.81 -11.70 8.67 -5.65 -0.05 -11.75 16 11 C -0.10 -2.00 4.78 -26.73 -0.13 -2.13 16 12 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 N -0.49 -7.90 11.55 -9.87 -0.11 -8.01 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.35 4.67 8.97 -39.29 -0.35 4.32 16 30 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.04 0.99 7.75 -51.93 -0.40 0.58 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -31.02 302.49 -6.29 -37.31 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.30 Total: 2.08 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -1.68 Total: -10.54 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.95 Total: -51.32 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.02 -6.29 -37.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822644041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.267 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds