Wall clock time and date at job start Sun Mar 29 2020 22:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47011 * 2 1 4 4 C 1.50700 * 109.46824 * 119.99942 * 2 1 3 5 5 N 1.29942 * 126.28944 * 300.02515 * 4 2 1 6 6 O 1.21306 * 110.25137 * 179.97438 * 5 4 2 7 7 C 1.33645 * 109.81154 * 359.97438 * 6 5 4 8 8 C 1.50691 * 126.55129 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47030 * 164.95516 * 8 7 6 10 10 N 1.46903 * 109.47146 * 44.95762 * 8 7 6 11 11 C 1.53001 * 109.47348 * 284.95879 * 8 7 6 12 12 C 1.52995 * 109.47342 * 185.00152 * 11 8 7 13 13 C 1.50700 * 109.47221 * 180.02562 * 12 11 8 14 14 H 1.08000 * 119.99896 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99962 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99794 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46971 * 60.00117 * 17 15 13 19 19 H 1.48498 * 109.46713 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46982 * 299.99610 * 17 15 13 21 21 N 1.31138 * 106.89453 * 0.02562 * 7 6 5 22 22 H 1.09003 * 109.47264 * 299.99888 * 1 2 3 23 23 H 1.08998 * 109.46913 * 59.99712 * 1 2 3 24 24 H 1.09004 * 109.47109 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47264 * 240.00112 * 2 1 3 26 26 H 1.09003 * 109.47471 * 60.00238 * 3 2 1 27 27 H 1.09000 * 109.47058 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47517 * 299.99918 * 3 2 1 29 29 H 1.00895 * 111.00401 * 299.99865 * 10 8 7 30 30 H 1.00904 * 110.99917 * 63.95430 * 10 8 7 31 31 H 1.09002 * 109.46925 * 304.99923 * 11 8 7 32 32 H 1.08998 * 109.47082 * 64.99434 * 11 8 7 33 33 H 1.09004 * 109.47430 * 299.99891 * 12 11 8 34 34 H 1.09006 * 109.47321 * 59.99733 * 12 11 8 35 35 H 0.97003 * 119.99314 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7945 -0.3749 2.4631 6 8 2.3407 -1.1482 3.2216 7 6 2.9984 -2.0789 2.5235 8 6 3.8044 -3.2207 3.0870 9 1 3.9953 -3.9528 2.3023 10 7 3.0552 -3.8571 4.1787 11 6 5.1351 -2.6896 3.6237 12 6 6.0048 -3.8621 4.0817 13 6 7.3152 -3.3389 4.6109 14 1 7.5086 -2.2764 4.6193 15 6 8.2677 -4.2168 5.0834 16 7 8.0324 -5.5106 5.0726 17 14 9.8924 -3.5683 5.7387 18 1 9.6367 -2.6635 6.8882 19 1 10.7363 -4.7063 6.1833 20 1 10.5952 -2.8195 4.6661 21 7 2.8083 -1.8087 1.2544 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 2.8656 -3.1985 4.9192 30 1 2.2015 -4.2727 3.8371 31 1 5.6512 -2.1403 2.8363 32 1 4.9475 -2.0251 4.4671 33 1 5.4888 -4.4114 4.8692 34 1 6.1924 -4.5265 3.2382 35 1 8.7026 -6.1282 5.4047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822644041.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:51 Heat of formation + Delta-G solvation = 18.266200 kcal Electronic energy + Delta-G solvation = -16783.488551 eV Core-core repulsion = 14010.944942 eV Total energy + Delta-G solvation = -2772.543609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.67993 -38.13610 -37.93103 -35.52031 -34.91224 -32.48591 -31.92930 -28.22809 -28.20169 -25.89008 -25.59542 -23.87055 -22.21840 -20.76090 -19.12846 -18.77793 -18.28647 -17.29233 -16.64298 -16.26446 -16.12068 -15.50627 -15.17778 -14.47819 -14.28498 -14.10989 -13.80900 -13.37299 -13.24591 -12.85022 -12.77429 -12.71169 -12.48909 -12.47630 -12.31612 -12.14091 -11.91296 -11.71106 -11.51505 -11.22149 -10.85387 -10.47996 -10.01424 -8.12580 -6.22369 0.00512 1.12310 1.43731 1.45862 1.53578 1.68285 2.44722 2.51314 2.95740 3.20880 3.51110 3.70437 3.93490 3.99687 4.02030 4.21254 4.30748 4.64461 4.65387 4.67871 4.79490 4.79743 4.88276 4.93092 5.00167 5.18297 5.21875 5.23767 5.58541 5.83675 5.98303 5.99579 6.31188 6.45909 6.95359 7.05334 7.45498 8.98474 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042365 B = 0.004495 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.759887 B = 6227.019883 C = 6575.460982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.170 3.830 5 N -0.400 5.400 6 O 0.066 5.934 7 C 0.162 3.838 8 C 0.201 3.799 9 H 0.123 0.877 10 N -0.818 5.818 11 C -0.089 4.089 12 C 0.040 3.960 13 C -0.546 4.546 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.958 3.042 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.270 1.270 21 N -0.502 5.502 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.109 0.891 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.356 0.644 30 H 0.356 0.644 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.018 0.982 34 H -0.008 1.008 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 10.247 -8.864 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.103 4.103 5 N -0.111 5.111 6 O 0.012 5.988 7 C -0.061 4.061 8 C 0.085 3.915 9 H 0.141 0.859 10 N -0.349 5.349 11 C -0.128 4.128 12 C 0.002 3.998 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.195 1.195 21 N -0.236 5.236 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.011 0.989 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.560 10.215 -8.913 19.894 hybrid contribution 0.388 0.528 0.362 0.748 sum -14.172 10.742 -8.551 19.732 Atomic orbital electron populations 1.21817 0.91442 1.02454 1.03829 1.19839 0.97518 0.95778 0.89711 1.21835 1.00884 0.93261 1.03859 1.26594 0.95727 0.92488 0.95461 1.74518 1.18979 1.14308 1.03284 1.85244 1.48220 1.29795 1.35576 1.30970 0.94394 0.94391 0.86375 1.20414 0.90785 0.86222 0.94066 0.85927 1.58774 1.28365 1.37324 1.10419 1.21544 0.92184 0.99332 0.99711 1.18823 0.92719 0.92754 0.95470 1.21688 1.02084 0.93301 1.41334 0.92674 1.25860 1.02235 0.95066 0.96240 1.70087 1.36177 1.02685 1.47853 0.85617 0.79270 0.77875 0.78966 1.19347 1.20884 1.19521 1.71956 1.17706 1.15194 1.18746 0.92763 0.88271 0.92890 0.87245 0.92773 0.93354 0.88146 0.82942 0.82896 0.92771 0.92046 0.96328 0.98946 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.18 71.98 0.66 -1.49 16 2 C -0.01 -0.17 3.39 -11.54 -0.04 -0.21 16 3 C -0.14 -2.39 9.17 71.98 0.66 -1.73 16 4 C 0.17 4.82 6.72 138.46 0.93 5.75 16 5 N -0.40 -12.12 12.16 -60.30 -0.73 -12.86 16 6 O 0.07 2.02 11.29 74.81 0.84 2.87 16 7 C 0.16 5.01 7.31 88.38 0.65 5.65 16 8 C 0.20 6.39 3.29 44.17 0.15 6.54 16 9 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 10 N -0.82 -23.12 8.67 -171.80 -1.49 -24.61 16 11 C -0.09 -3.50 4.78 30.59 0.15 -3.36 16 12 C 0.04 2.01 4.86 29.85 0.15 2.16 16 13 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 14 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 15 C 0.00 0.23 5.46 84.66 0.46 0.70 16 16 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 17 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 N -0.50 -15.87 11.55 -303.18 -3.50 -19.37 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.36 9.27 8.97 -89.70 -0.81 8.47 16 30 H 0.36 8.10 9.06 -89.69 -0.81 7.28 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.02 1.00 7.75 -2.39 -0.02 0.98 16 34 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -65.93 302.49 0.90 -65.03 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -0.52 Total: 14.90 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 3.99 Total: -16.48 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -5.44 Total: -112.54 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.84 Total: 2.87 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.93 0.90 -65.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822644041.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.297 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds