Wall clock time and date at job start Sun Mar 29 2020 22:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29946 * 126.28244 * 300.02057 * 4 2 1 6 6 O 1.21300 * 110.24632 * 179.97438 * 5 4 2 7 7 C 1.33639 * 109.81676 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.55504 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47028 * 194.97674 * 8 7 6 10 10 N 1.46901 * 109.47180 * 314.97711 * 8 7 6 11 11 C 1.52999 * 109.47159 * 74.97621 * 8 7 6 12 12 C 1.53001 * 109.47330 * 174.99929 * 11 8 7 13 13 C 1.50699 * 109.47460 * 180.02562 * 12 11 8 14 14 H 1.08008 * 119.99502 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00131 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47067 * 120.00159 * 17 15 13 20 20 H 1.48500 * 109.46913 * 239.99830 * 17 15 13 21 21 N 1.31140 * 106.89440 * 359.76839 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.00903 * 110.99857 * 296.04750 * 10 8 7 30 30 H 1.00906 * 110.99964 * 59.99785 * 10 8 7 31 31 H 1.08993 * 109.47449 * 295.00502 * 11 8 7 32 32 H 1.09005 * 109.46860 * 55.00252 * 11 8 7 33 33 H 1.09006 * 109.46999 * 300.00465 * 12 11 8 34 34 H 1.08999 * 109.46571 * 60.00093 * 12 11 8 35 35 H 0.97003 * 119.99883 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7946 -0.3750 2.4631 6 8 2.3409 -1.1482 3.2215 7 6 2.9994 -2.0783 2.5235 8 6 3.8066 -3.2192 3.0870 9 1 4.4327 -3.6438 2.3021 10 7 4.6569 -2.7254 4.1783 11 6 2.8617 -4.2961 3.6240 12 6 3.6766 -5.5074 4.0820 13 6 2.7459 -6.5684 4.6104 14 1 1.6797 -6.3961 4.6183 15 6 3.2554 -7.7588 5.0836 16 7 4.5537 -7.9688 5.0735 17 14 2.1016 -9.0742 5.7379 18 1 0.6993 -8.5958 5.6401 19 1 2.2592 -10.3142 4.9362 20 1 2.4293 -9.3581 7.1582 21 7 2.8052 -1.8109 1.2544 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 5.3336 -2.0596 3.8365 30 1 4.0995 -2.3267 4.9189 31 1 2.2982 -3.8973 4.4675 32 1 2.1714 -4.5993 2.8367 33 1 4.2401 -5.9062 3.2384 34 1 4.3668 -5.2042 4.8692 35 1 4.9121 -8.8065 5.4061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822644045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:53 Heat of formation + Delta-G solvation = 40.904809 kcal Electronic energy + Delta-G solvation = -16782.804615 eV Core-core repulsion = 14011.242690 eV Total energy + Delta-G solvation = -2771.561925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.47566 -36.93132 -36.71313 -34.31459 -33.01684 -31.16719 -30.27114 -27.49331 -26.53689 -24.61367 -24.15900 -22.50249 -20.60853 -19.58415 -17.89778 -17.50879 -16.30543 -15.97494 -15.23556 -15.17975 -14.45411 -14.23516 -14.03750 -13.67682 -12.62450 -12.54098 -12.46133 -12.11730 -11.91886 -11.83028 -11.72139 -11.32228 -11.24056 -10.92323 -10.90731 -10.69794 -10.55157 -9.98234 -9.83261 -9.36941 -9.01779 -8.82615 -8.28622 -5.95452 -3.97567 1.23760 2.30117 2.93873 3.33933 3.41550 3.45436 3.57772 4.06299 4.49406 4.64447 4.74480 4.77552 4.80798 5.20507 5.30934 5.39906 5.41999 5.49752 5.51768 5.59448 5.73693 5.85073 5.89360 5.93434 6.11319 6.40317 6.56849 7.00258 7.16379 7.51013 7.74549 7.91938 8.08764 8.26090 8.45578 9.09919 9.65871 11.15526 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042365 B = 0.004496 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.766782 B = 6226.617710 C = 6575.248208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.170 3.830 5 N -0.389 5.389 6 O 0.071 5.929 7 C 0.160 3.840 8 C 0.185 3.815 9 H 0.124 0.876 10 N -0.812 5.812 11 C -0.102 4.102 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 N -0.486 5.486 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.340 0.660 30 H 0.349 0.651 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.016 0.984 34 H 0.037 0.963 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 16.573 -8.256 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 C -0.202 4.202 4 C -0.103 4.103 5 N -0.098 5.098 6 O 0.014 5.986 7 C -0.063 4.063 8 C 0.070 3.930 9 H 0.142 0.858 10 N -0.341 5.341 11 C -0.140 4.140 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 N -0.220 5.220 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.056 0.944 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.732 16.309 -8.319 18.685 hybrid contribution -0.948 0.019 0.202 0.969 sum -4.679 16.328 -8.117 18.825 Atomic orbital electron populations 1.21846 0.92961 1.02712 1.02783 1.19527 0.96376 0.95253 0.91185 1.21834 1.01396 0.94120 1.02810 1.25849 0.96958 0.92953 0.94545 1.74522 1.17795 1.14659 1.02835 1.85251 1.47661 1.30205 1.35438 1.31217 0.94276 0.94553 0.86291 1.20841 0.91821 0.86454 0.93849 0.85808 1.58826 1.18809 1.45773 1.10673 1.21841 0.97081 0.95422 0.99694 1.19029 0.94999 0.89428 0.97141 1.21283 0.93316 1.00366 1.41105 0.92863 1.24980 0.94962 0.98347 0.95996 1.69981 1.11114 1.25016 1.47005 0.86585 0.81186 0.81885 0.78623 1.19853 1.21074 1.21033 1.71937 1.17796 1.13633 1.18604 0.91159 0.91915 0.92164 0.88129 0.92369 0.91153 0.91940 0.84746 0.83703 0.92425 0.92350 0.96560 0.94432 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 3 C -0.14 -1.29 9.17 37.15 0.34 -0.94 16 4 C 0.17 2.50 6.72 -156.37 -1.05 1.45 16 5 N -0.39 -6.06 12.16 30.90 0.38 -5.69 16 6 O 0.07 1.11 11.29 18.11 0.20 1.32 16 7 C 0.16 2.52 7.31 -13.05 -0.10 2.43 16 8 C 0.19 2.98 3.29 -68.87 -0.23 2.75 16 9 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 10 N -0.81 -11.69 8.67 -5.65 -0.05 -11.74 16 11 C -0.10 -2.00 4.78 -26.73 -0.13 -2.13 16 12 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 13 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 N -0.49 -7.90 11.55 -9.87 -0.11 -8.01 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.34 4.02 9.06 -39.29 -0.36 3.67 16 30 H 0.35 4.66 8.98 -39.29 -0.35 4.31 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -31.06 302.50 -6.29 -37.35 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.30 Total: 2.00 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.68 Total: -10.53 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.95 Total: -51.29 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.06 -6.29 -37.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822644045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.257 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds