Wall clock time and date at job start Sun Mar 29 2020 22:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.29946 * 126.28244 * 300.02057 * 4 2 1 6 6 O 1.21300 * 110.24632 * 179.97438 * 5 4 2 7 7 C 1.33639 * 109.81676 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.55504 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47028 * 194.97674 * 8 7 6 10 10 N 1.46901 * 109.47180 * 314.97711 * 8 7 6 11 11 C 1.52999 * 109.47159 * 74.97621 * 8 7 6 12 12 C 1.53001 * 109.47330 * 174.99929 * 11 8 7 13 13 C 1.50699 * 109.47460 * 180.02562 * 12 11 8 14 14 H 1.08008 * 119.99502 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00131 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99875 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47067 * 120.00159 * 17 15 13 20 20 H 1.48500 * 109.46913 * 239.99830 * 17 15 13 21 21 N 1.31140 * 106.89440 * 359.76839 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.00903 * 110.99857 * 296.04750 * 10 8 7 30 30 H 1.00906 * 110.99964 * 59.99785 * 10 8 7 31 31 H 1.08993 * 109.47449 * 295.00502 * 11 8 7 32 32 H 1.09005 * 109.46860 * 55.00252 * 11 8 7 33 33 H 1.09006 * 109.46999 * 300.00465 * 12 11 8 34 34 H 1.08999 * 109.46571 * 60.00093 * 12 11 8 35 35 H 0.97003 * 119.99883 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7946 -0.3750 2.4631 6 8 2.3409 -1.1482 3.2215 7 6 2.9994 -2.0783 2.5235 8 6 3.8066 -3.2192 3.0870 9 1 4.4327 -3.6438 2.3021 10 7 4.6569 -2.7254 4.1783 11 6 2.8617 -4.2961 3.6240 12 6 3.6766 -5.5074 4.0820 13 6 2.7459 -6.5684 4.6104 14 1 1.6797 -6.3961 4.6183 15 6 3.2554 -7.7588 5.0836 16 7 4.5537 -7.9688 5.0735 17 14 2.1016 -9.0742 5.7379 18 1 0.6993 -8.5958 5.6401 19 1 2.2592 -10.3142 4.9362 20 1 2.4293 -9.3581 7.1582 21 7 2.8052 -1.8109 1.2544 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 5.3336 -2.0596 3.8365 30 1 4.0995 -2.3267 4.9189 31 1 2.2982 -3.8973 4.4675 32 1 2.1714 -4.5993 2.8367 33 1 4.2401 -5.9062 3.2384 34 1 4.3668 -5.2042 4.8692 35 1 4.9121 -8.8065 5.4061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822644045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:53 Heat of formation + Delta-G solvation = 18.173484 kcal Electronic energy + Delta-G solvation = -16783.790320 eV Core-core repulsion = 14011.242690 eV Total energy + Delta-G solvation = -2772.547629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.68162 -38.13615 -37.93129 -35.52135 -34.91405 -32.48600 -31.92982 -28.22933 -28.20231 -25.89180 -25.59611 -23.87191 -22.21975 -20.76119 -19.12936 -18.77968 -18.29198 -17.29224 -16.64375 -16.25773 -16.12056 -15.50800 -15.17831 -14.47809 -14.30164 -14.11050 -13.80475 -13.37277 -13.24587 -12.85040 -12.81173 -12.71025 -12.49126 -12.44817 -12.31648 -12.13086 -11.91359 -11.72022 -11.52076 -11.19820 -10.85008 -10.49058 -10.01473 -8.13003 -6.22615 0.00518 1.12270 1.42952 1.43795 1.55968 1.68356 2.44507 2.51257 2.95786 3.20631 3.51116 3.70435 3.93485 3.99723 4.02059 4.21271 4.30736 4.64467 4.65383 4.67874 4.79462 4.79752 4.88284 4.93096 5.00167 5.18297 5.21843 5.23789 5.58875 5.83629 5.98286 5.99534 6.31102 6.45934 6.95466 7.05368 7.45422 8.98440 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042365 B = 0.004496 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.766782 B = 6226.617710 C = 6575.248208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.137 4.137 4 C 0.170 3.830 5 N -0.400 5.400 6 O 0.066 5.934 7 C 0.162 3.838 8 C 0.201 3.799 9 H 0.123 0.877 10 N -0.818 5.818 11 C -0.089 4.089 12 C 0.039 3.961 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.278 1.278 21 N -0.502 5.502 22 H 0.100 0.900 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.356 0.644 30 H 0.356 0.644 31 H 0.061 0.939 32 H 0.053 0.947 33 H -0.008 1.008 34 H 0.019 0.981 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 17.404 -8.875 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.195 4.195 4 C -0.103 4.103 5 N -0.111 5.111 6 O 0.012 5.988 7 C -0.061 4.061 8 C 0.085 3.915 9 H 0.141 0.859 10 N -0.349 5.349 11 C -0.128 4.128 12 C 0.002 3.998 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.204 1.204 21 N -0.236 5.236 22 H 0.119 0.881 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.128 0.872 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.171 0.829 30 H 0.171 0.829 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.011 0.989 34 H 0.037 0.963 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.763 17.158 -8.927 19.919 hybrid contribution -0.610 -0.200 0.367 0.740 sum -5.373 16.959 -8.560 19.742 Atomic orbital electron populations 1.21837 0.91885 1.02261 1.03859 1.19838 0.97221 0.96072 0.89712 1.21814 1.01043 0.92856 1.03829 1.26596 0.95880 0.92336 0.95460 1.74519 1.18321 1.14967 1.03287 1.85240 1.47755 1.30251 1.35582 1.30973 0.94218 0.94573 0.86374 1.20415 0.91109 0.85886 0.94071 0.85923 1.58778 1.18980 1.46699 1.10421 1.21545 0.96905 0.94616 0.99708 1.18834 0.94615 0.90880 0.95498 1.21737 0.93880 1.01439 1.41106 0.92702 1.25857 0.96541 1.00774 0.96273 1.70099 1.12951 1.25825 1.47951 0.85506 0.79288 0.78855 0.78022 1.18967 1.20540 1.20417 1.71956 1.18442 1.14452 1.18749 0.88148 0.92769 0.93357 0.87247 0.92884 0.88265 0.92770 0.82894 0.82940 0.92053 0.92780 0.98923 0.96300 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.18 71.98 0.66 -1.74 16 2 C -0.01 -0.17 3.39 -11.54 -0.04 -0.20 16 3 C -0.14 -2.15 9.17 71.98 0.66 -1.49 16 4 C 0.17 4.81 6.72 138.47 0.93 5.75 16 5 N -0.40 -12.13 12.16 -60.33 -0.73 -12.86 16 6 O 0.07 2.02 11.29 74.87 0.85 2.87 16 7 C 0.16 5.00 7.31 88.38 0.65 5.65 16 8 C 0.20 6.39 3.29 44.17 0.15 6.53 16 9 H 0.12 3.97 8.14 -2.38 -0.02 3.95 16 10 N -0.82 -23.09 8.67 -171.80 -1.49 -24.58 16 11 C -0.09 -3.50 4.78 30.59 0.15 -3.36 16 12 C 0.04 1.98 4.86 29.85 0.15 2.12 16 13 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 14 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 17 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 N -0.50 -15.87 11.55 -303.21 -3.50 -19.37 16 22 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.36 8.09 9.06 -89.69 -0.81 7.27 16 30 H 0.36 9.26 8.98 -89.69 -0.81 8.46 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 33 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 34 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -65.99 302.50 0.90 -65.09 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.52 Total: 14.63 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 3.99 Total: -16.41 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -5.44 Total: -112.46 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.99 0.90 -65.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822644045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.264 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds