Wall clock time and date at job start Sun Mar 29 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00314 * 2 1 4 4 C 1.53001 * 109.47057 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47107 * 65.00130 * 4 3 2 6 6 C 1.36820 * 119.99910 * 85.92582 * 5 4 3 7 7 H 1.08002 * 119.99508 * 215.38296 * 6 5 4 8 8 C 1.39069 * 120.00270 * 35.38351 * 6 5 4 9 9 N 1.31348 * 120.00059 * 21.75750 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 201.75572 * 8 6 5 11 11 H 1.48496 * 109.46879 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46888 * 120.00149 * 10 8 6 13 13 H 1.48493 * 109.47305 * 240.00002 * 10 8 6 14 14 C 1.34770 * 119.99848 * 265.64619 * 5 4 3 15 15 O 1.21667 * 120.00084 * 0.02562 * 14 5 4 16 16 C 1.46947 * 120.00031 * 180.02562 * 14 5 4 17 17 C 1.33126 * 120.00071 * 180.02562 * 16 14 5 18 18 C 1.51411 * 136.31492 * 359.62873 * 17 16 14 19 19 C 1.53382 * 87.51743 * 206.05882 * 18 17 16 20 20 C 1.51408 * 136.31945 * 180.02562 * 17 16 14 21 21 H 1.09007 * 109.46725 * 60.00241 * 1 2 3 22 22 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47001 * 300.00419 * 1 2 3 24 24 H 1.08992 * 109.47047 * 59.99863 * 3 2 1 25 25 H 1.09001 * 109.46648 * 299.99893 * 3 2 1 26 26 H 1.08992 * 109.47487 * 304.99594 * 4 3 2 27 27 H 1.09000 * 109.46951 * 184.99474 * 4 3 2 28 28 H 0.97000 * 120.00258 * 180.02562 * 9 8 6 29 29 H 1.07995 * 120.00395 * 0.02562 * 16 14 5 30 30 H 1.09000 * 113.55935 * 320.63393 * 18 17 16 31 31 H 1.08998 * 113.56021 * 91.37310 * 18 17 16 32 32 H 1.08999 * 113.96773 * 220.29242 * 19 18 17 33 33 H 1.08999 * 113.59730 * 88.79068 * 19 18 17 34 34 H 1.09002 * 113.55988 * 268.62926 * 20 17 16 35 35 H 1.09006 * 113.55907 * 39.35496 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1875 1.3362 -2.3604 7 1 3.9516 0.9489 -3.3406 8 6 4.7055 2.6197 -2.2260 9 7 5.3804 2.9460 -1.1474 10 14 4.4416 3.8800 -3.5794 11 1 3.6548 3.2673 -4.6796 12 1 3.7024 5.0461 -3.0325 13 1 5.7574 4.3286 -4.1015 14 6 4.1803 -0.7672 -1.3078 15 8 3.9973 -1.4534 -0.3199 16 6 4.6234 -1.3898 -2.5630 17 6 4.8240 -2.7046 -2.6193 18 6 4.7224 -3.8699 -1.6578 19 6 5.7670 -4.5875 -2.5219 20 6 5.2626 -3.7013 -3.6713 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8508 0.5685 0.8427 27 1 3.9785 2.1764 0.0901 28 1 5.7415 3.8414 -1.0535 29 1 4.7863 -0.7807 -3.4398 30 1 5.0756 -3.6378 -0.6531 31 1 3.7461 -4.3544 -1.6622 32 1 5.5688 -5.6497 -2.6651 33 1 6.7952 -4.3806 -2.2253 34 1 4.4345 -4.1395 -4.2284 35 1 6.0586 -3.3309 -4.3174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:56 Heat of formation + Delta-G solvation = -32.413125 kcal Electronic energy + Delta-G solvation = -17519.795725 eV Core-core repulsion = 14712.761745 eV Total energy + Delta-G solvation = -2807.033980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.78955 -37.76280 -36.72222 -34.59608 -31.54180 -30.37297 -28.63839 -25.74439 -25.24341 -24.83358 -23.03784 -21.37936 -19.26225 -17.90735 -16.31016 -16.11800 -15.55505 -15.23762 -14.98684 -14.54409 -14.40063 -14.17850 -13.47204 -13.05920 -12.74404 -12.01222 -11.83333 -11.65314 -11.49601 -11.32589 -11.10772 -11.05955 -10.89589 -10.56910 -10.40418 -10.26265 -10.10483 -9.82247 -9.14297 -8.94836 -8.27021 -8.19316 -7.42721 -6.35688 -4.00791 2.37838 3.11192 3.20892 3.24908 4.09565 4.52322 4.58712 4.70972 4.99452 5.09895 5.22766 5.47551 5.52578 5.70382 5.76658 5.90225 6.01505 6.03719 6.07933 6.12757 6.17029 6.23707 6.41748 6.53900 6.64369 6.70017 6.89498 7.22092 7.25674 7.43019 7.54924 7.92583 7.98976 8.43622 9.12656 9.64435 10.10608 10.64673 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.009274 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.583089 B = 3018.429467 C = 4094.303418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.051 3.949 4 C 0.111 3.889 5 N -0.433 5.433 6 C -0.330 4.330 7 H 0.090 0.910 8 C 0.038 3.962 9 N -0.861 5.861 10 Si 0.911 3.089 11 H -0.268 1.268 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.507 3.493 15 O -0.590 6.590 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.143 4.143 20 C -0.103 4.103 21 H 0.032 0.968 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.269 0.731 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -4.892 -2.641 6.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.013 4.013 5 N -0.151 5.151 6 C -0.458 4.458 7 H 0.108 0.892 8 C -0.167 4.167 9 N -0.498 5.498 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.207 1.207 14 C 0.298 3.702 15 O -0.476 6.476 16 C -0.157 4.157 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.180 4.180 20 C -0.140 4.140 21 H 0.050 0.950 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.139 0.861 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.502 -5.188 -2.059 6.590 hybrid contribution -0.341 1.238 -0.794 1.510 sum -3.843 -3.950 -2.853 6.206 Atomic orbital electron populations 1.22617 0.83466 1.01577 0.98827 1.88142 1.17445 1.28201 1.95070 1.23084 0.96555 0.84226 0.98759 1.21561 0.89494 1.02298 0.87995 1.43167 1.56938 1.04726 1.10295 1.19463 1.42110 0.96862 0.87391 0.89245 1.25365 0.94363 0.99293 0.97683 1.69852 1.30643 1.20696 1.28650 0.86120 0.78314 0.80617 0.81167 1.19184 1.20555 1.20721 1.18283 0.80800 0.83228 0.87866 1.90608 1.56538 1.62985 1.37458 1.21955 1.01721 0.93007 0.99066 1.23079 0.98162 0.93310 0.97751 1.21977 0.98342 0.93743 0.98998 1.22701 0.99488 0.98161 0.97686 1.22183 1.00240 0.95548 0.96037 0.94962 0.90642 0.95172 0.94434 0.93410 0.91669 0.86119 0.92068 0.85399 0.90136 0.89818 0.91454 0.90268 0.89423 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -8.23 10.04 -35.23 -0.35 -8.59 16 3 C 0.05 1.10 6.26 37.16 0.23 1.34 16 4 C 0.11 2.72 5.49 -4.04 -0.02 2.70 16 5 N -0.43 -11.31 2.50 -116.21 -0.29 -11.60 16 6 C -0.33 -8.47 8.50 -15.02 -0.13 -8.60 16 7 H 0.09 2.22 6.68 -52.49 -0.35 1.87 16 8 C 0.04 0.96 5.01 -17.45 -0.09 0.87 16 9 N -0.86 -22.56 11.28 55.50 0.63 -21.93 16 10 Si 0.91 19.27 29.61 -169.99 -5.03 14.23 16 11 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.51 13.24 7.30 -12.74 -0.09 13.14 16 15 O -0.59 -16.40 14.34 5.22 0.07 -16.32 16 16 C -0.14 -3.08 9.28 -37.84 -0.35 -3.43 16 17 C -0.12 -2.34 6.93 -100.44 -0.70 -3.04 16 18 C -0.09 -1.67 6.99 -27.55 -0.19 -1.86 16 19 C -0.14 -2.02 8.17 -26.20 -0.21 -2.23 16 20 C -0.10 -1.52 7.95 -27.41 -0.22 -1.74 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.68 7.29 -51.93 -0.38 1.30 16 27 H 0.12 3.06 5.35 -51.93 -0.28 2.79 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.13 2.75 6.48 -52.49 -0.34 2.41 16 30 H 0.08 1.61 7.49 -51.93 -0.39 1.22 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -30.10 294.98 -6.29 -36.38 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.10 Total: 4.59 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.66 Total: -1.21 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.34 Total: -33.53 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.28 Total: -24.91 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.10 -6.29 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.969 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds