Wall clock time and date at job start Sun Mar 29 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00314 * 2 1 4 4 C 1.53001 * 109.47057 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47107 * 65.00130 * 4 3 2 6 6 C 1.36820 * 119.99910 * 85.92582 * 5 4 3 7 7 H 1.08002 * 119.99508 * 215.38296 * 6 5 4 8 8 C 1.39069 * 120.00270 * 35.38351 * 6 5 4 9 9 N 1.31348 * 120.00059 * 21.75750 * 8 6 5 10 10 Si 1.86803 * 120.00124 * 201.75572 * 8 6 5 11 11 H 1.48496 * 109.46879 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46888 * 120.00149 * 10 8 6 13 13 H 1.48493 * 109.47305 * 240.00002 * 10 8 6 14 14 C 1.34770 * 119.99848 * 265.64619 * 5 4 3 15 15 O 1.21667 * 120.00084 * 0.02562 * 14 5 4 16 16 C 1.46947 * 120.00031 * 180.02562 * 14 5 4 17 17 C 1.33126 * 120.00071 * 180.02562 * 16 14 5 18 18 C 1.51411 * 136.31492 * 359.62873 * 17 16 14 19 19 C 1.53382 * 87.51743 * 206.05882 * 18 17 16 20 20 C 1.51408 * 136.31945 * 180.02562 * 17 16 14 21 21 H 1.09007 * 109.46725 * 60.00241 * 1 2 3 22 22 H 1.08999 * 109.46976 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47001 * 300.00419 * 1 2 3 24 24 H 1.08992 * 109.47047 * 59.99863 * 3 2 1 25 25 H 1.09001 * 109.46648 * 299.99893 * 3 2 1 26 26 H 1.08992 * 109.47487 * 304.99594 * 4 3 2 27 27 H 1.09000 * 109.46951 * 184.99474 * 4 3 2 28 28 H 0.97000 * 120.00258 * 180.02562 * 9 8 6 29 29 H 1.07995 * 120.00395 * 0.02562 * 16 14 5 30 30 H 1.09000 * 113.55935 * 320.63393 * 18 17 16 31 31 H 1.08998 * 113.56021 * 91.37310 * 18 17 16 32 32 H 1.08999 * 113.96773 * 220.29242 * 19 18 17 33 33 H 1.08999 * 113.59730 * 88.79068 * 19 18 17 34 34 H 1.09002 * 113.55988 * 268.62926 * 20 17 16 35 35 H 1.09006 * 113.55907 * 39.35496 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1875 1.3362 -2.3604 7 1 3.9516 0.9489 -3.3406 8 6 4.7055 2.6197 -2.2260 9 7 5.3804 2.9460 -1.1474 10 14 4.4416 3.8800 -3.5794 11 1 3.6548 3.2673 -4.6796 12 1 3.7024 5.0461 -3.0325 13 1 5.7574 4.3286 -4.1015 14 6 4.1803 -0.7672 -1.3078 15 8 3.9973 -1.4534 -0.3199 16 6 4.6234 -1.3898 -2.5630 17 6 4.8240 -2.7046 -2.6193 18 6 4.7224 -3.8699 -1.6578 19 6 5.7670 -4.5875 -2.5219 20 6 5.2626 -3.7013 -3.6713 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6887 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8508 0.5685 0.8427 27 1 3.9785 2.1764 0.0901 28 1 5.7415 3.8414 -1.0535 29 1 4.7863 -0.7807 -3.4398 30 1 5.0756 -3.6378 -0.6531 31 1 3.7461 -4.3544 -1.6622 32 1 5.5688 -5.6497 -2.6651 33 1 6.7952 -4.3806 -2.2253 34 1 4.4345 -4.1395 -4.2284 35 1 6.0586 -3.3309 -4.3174 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837233362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:56 Heat of formation + Delta-G solvation = -50.909378 kcal Electronic energy + Delta-G solvation = -17520.597783 eV Core-core repulsion = 14712.761745 eV Total energy + Delta-G solvation = -2807.836038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57136 -39.28069 -38.38402 -36.54514 -33.49994 -32.07823 -30.31796 -27.23610 -26.75764 -26.54816 -24.60792 -22.96711 -21.12368 -19.59525 -18.00522 -17.94099 -17.23329 -16.96154 -16.27173 -16.20143 -16.15906 -15.80805 -15.08378 -14.84376 -14.55377 -13.47501 -13.34704 -13.30903 -13.22443 -12.82597 -12.69100 -12.60200 -12.51309 -12.23041 -12.00130 -11.91113 -11.71295 -11.26740 -11.03670 -10.55263 -10.12041 -9.91143 -9.38752 -8.27729 -6.00603 0.70732 1.44760 1.48456 1.61357 2.31725 2.64218 2.96248 3.02075 3.25203 3.71463 3.78001 3.98510 4.26215 4.33538 4.37279 4.47801 4.55039 4.58268 4.67168 4.77077 4.79877 4.80833 4.94471 5.04092 5.06935 5.13754 5.28220 5.45452 5.50024 5.55827 5.93371 6.05280 6.37165 6.49896 7.16621 7.68549 8.15375 8.73983 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.009274 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.583089 B = 3018.429467 C = 4094.303418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.062 3.938 4 C 0.109 3.891 5 N -0.444 5.444 6 C -0.348 4.348 7 H 0.093 0.907 8 C 0.000 4.000 9 N -0.894 5.894 10 Si 0.983 3.017 11 H -0.259 1.259 12 H -0.274 1.274 13 H -0.280 1.280 14 C 0.491 3.509 15 O -0.623 6.623 16 C -0.183 4.183 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.090 4.090 21 H 0.042 0.958 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.040 0.960 27 H 0.111 0.889 28 H 0.273 0.727 29 H 0.130 0.870 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -5.628 -4.538 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.015 4.015 4 C -0.015 4.015 5 N -0.161 5.161 6 C -0.476 4.476 7 H 0.111 0.889 8 C -0.202 4.202 9 N -0.531 5.531 10 Si 0.807 3.193 11 H -0.183 1.183 12 H -0.200 1.200 13 H -0.205 1.205 14 C 0.283 3.717 15 O -0.512 6.512 16 C -0.203 4.203 17 C -0.113 4.113 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.126 4.126 21 H 0.061 0.939 22 H 0.107 0.893 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.050 -5.921 -3.961 8.194 hybrid contribution -0.171 1.346 -0.129 1.363 sum -4.221 -4.574 -4.090 7.448 Atomic orbital electron populations 1.22864 0.80565 1.03090 1.00465 1.88081 1.20701 1.28461 1.95380 1.22876 0.94243 0.84467 0.99906 1.21514 0.92071 1.00903 0.87041 1.43399 1.56996 1.05053 1.10684 1.19720 1.42934 0.97460 0.87498 0.88921 1.26218 0.93433 1.00594 0.99992 1.69950 1.31271 1.21342 1.30571 0.85032 0.78159 0.77796 0.78335 1.18312 1.19974 1.20539 1.18973 0.80427 0.83342 0.88930 1.90556 1.58254 1.63581 1.38816 1.21766 1.06232 0.94503 0.97844 1.23848 0.93622 0.93047 1.00786 1.22183 1.00399 0.94150 0.97734 1.22660 0.98160 0.99934 0.95306 1.22312 1.01488 0.93275 0.95574 0.93906 0.89296 0.92811 0.91619 0.93625 0.94176 0.87139 0.91669 0.85194 0.93295 0.88641 0.87786 0.90127 0.86542 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.41 -18.28 10.04 -148.98 -1.50 -19.77 16 3 C 0.06 2.71 6.26 71.98 0.45 3.17 16 4 C 0.11 5.59 5.49 86.38 0.47 6.07 16 5 N -0.44 -24.10 2.50 -639.80 -1.60 -25.70 16 6 C -0.35 -18.28 8.50 84.11 0.71 -17.57 16 7 H 0.09 4.68 6.68 -2.91 -0.02 4.66 16 8 C 0.00 0.00 5.01 84.96 0.43 0.43 16 9 N -0.89 -47.71 11.28 21.68 0.24 -47.46 16 10 Si 0.98 39.30 29.61 68.60 2.03 41.33 16 11 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 12 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 13 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 14 C 0.49 26.74 7.30 86.53 0.63 27.38 16 15 O -0.62 -36.42 14.34 -4.24 -0.06 -36.48 16 16 C -0.18 -8.44 9.28 23.40 0.22 -8.22 16 17 C -0.11 -4.22 6.93 -17.15 -0.12 -4.34 16 18 C -0.11 -3.74 6.99 30.06 0.21 -3.53 16 19 C -0.12 -3.06 8.17 30.94 0.25 -2.81 16 20 C -0.09 -2.33 7.95 30.15 0.24 -2.09 16 21 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.04 2.20 7.29 -2.39 -0.02 2.18 16 27 H 0.11 5.86 5.35 -2.39 -0.01 5.84 16 28 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 29 H 0.13 5.74 6.48 -2.91 -0.02 5.72 16 30 H 0.05 2.00 7.49 -2.39 -0.02 1.99 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -67.84 294.98 4.94 -62.91 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 1.07 Total: 24.60 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 4.75 Total: 0.58 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.35 Total: -73.16 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -1.56 Total: -56.26 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -67.84 4.94 -62.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.996 kcal (2) G-P(sol) polarization free energy of solvation -67.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds