Wall clock time and date at job start Sun Mar 29 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99774 * 2 1 3 5 5 C 1.53002 * 109.47463 * 174.99967 * 4 2 1 6 6 H 1.08998 * 109.46859 * 305.00666 * 5 4 2 7 7 O 1.42900 * 109.46828 * 65.00043 * 5 4 2 8 8 C 1.50695 * 109.47388 * 185.00358 * 5 4 2 9 9 C 1.34515 * 125.79319 * 100.00077 * 8 5 4 10 10 C 1.41376 * 106.84242 * 179.73499 * 9 8 5 11 11 C 1.34516 * 106.84089 * 0.02562 * 10 9 8 12 12 O 1.34298 * 108.42070 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.46989 * 120.00127 * 2 1 3 14 14 C 1.46897 * 111.00212 * 274.99804 * 13 2 1 15 15 C 1.50693 * 109.47661 * 180.02562 * 14 13 2 16 16 H 1.08001 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00516 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99503 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00365 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46952 * 89.99690 * 19 17 15 21 21 H 1.48501 * 109.47191 * 209.99971 * 19 17 15 22 22 H 1.48503 * 109.46990 * 330.00035 * 19 17 15 23 23 H 1.09000 * 109.47146 * 299.99989 * 1 2 3 24 24 H 1.09006 * 109.47098 * 60.00098 * 1 2 3 25 25 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47122 * 55.00248 * 4 2 1 27 27 H 1.09001 * 109.47674 * 295.00708 * 4 2 1 28 28 H 0.96699 * 113.99993 * 60.00600 * 7 5 4 29 29 H 1.08003 * 126.57278 * 359.76766 * 9 8 5 30 30 H 1.08003 * 126.57866 * 179.97438 * 10 9 8 31 31 H 1.08002 * 125.78796 * 180.02562 * 11 10 9 32 32 H 1.00906 * 111.00343 * 38.95412 * 13 2 1 33 33 H 1.09007 * 109.46988 * 300.00425 * 14 13 2 34 34 H 1.09004 * 109.47363 * 59.99925 * 14 13 2 35 35 H 0.97001 * 119.99713 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2677 7 8 4.1392 -1.3165 -0.2102 8 6 4.0570 -1.2158 -2.6043 9 6 4.4042 -0.5323 -3.7096 10 6 4.8088 -1.4865 -4.6711 11 6 4.6840 -2.6962 -4.0962 12 8 4.2274 -2.5262 -2.8447 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5884 -0.5215 3.5557 16 1 2.8388 -1.5693 3.4791 17 6 2.7319 0.1353 4.7595 18 7 2.4275 1.4114 4.8526 19 14 3.3584 -0.7872 6.2581 20 1 4.8394 -0.6932 6.3137 21 1 2.7778 -0.1882 7.4866 22 1 2.9562 -2.2137 6.1651 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 -2.1370 27 1 1.7516 -1.7715 -1.2056 28 1 3.9206 -2.2582 -0.1872 29 1 4.3793 0.5398 -3.8376 30 1 5.1514 -1.2833 -5.6750 31 1 4.9123 -3.6435 -4.5620 32 1 1.4495 -1.4980 1.4100 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5526 35 1 2.5287 1.8736 5.6993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843101505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:55 Heat of formation + Delta-G solvation = -40.430336 kcal Electronic energy + Delta-G solvation = -17037.971483 eV Core-core repulsion = 14230.589851 eV Total energy + Delta-G solvation = -2807.381633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.53722 -37.73665 -35.47250 -33.06757 -32.79655 -31.11234 -29.75861 -27.54696 -25.84632 -23.52968 -21.75224 -21.58788 -20.37678 -20.20668 -17.73224 -16.41811 -15.97607 -15.74345 -15.16691 -14.77060 -14.47230 -13.78625 -13.62159 -13.24130 -12.96699 -12.81618 -12.51012 -12.10483 -11.79204 -11.52289 -11.30096 -11.20039 -11.06592 -10.68681 -10.54381 -10.33431 -9.92450 -9.76021 -9.67224 -9.08369 -8.43710 -8.38167 -7.06861 -5.95044 -3.95322 1.75182 2.61570 3.00961 3.37826 3.43289 3.46863 4.50076 4.59966 4.87693 4.99693 5.01433 5.17655 5.26622 5.41205 5.53858 5.59839 5.75458 5.82300 5.84227 5.88634 6.04529 6.10533 6.17884 6.32284 6.48409 6.51735 6.60868 7.15370 7.37001 7.54137 7.88747 8.17531 8.23601 8.52901 8.73605 9.14228 9.68853 11.16290 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.005182 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.067318 B = 5402.426956 C = 5881.014431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.071 0.929 4 C -0.134 4.134 5 C 0.200 3.800 6 H 0.118 0.882 7 O -0.512 6.512 8 C -0.029 4.029 9 C -0.217 4.217 10 C -0.215 4.215 11 C -0.051 4.051 12 O -0.172 6.172 13 N -0.667 5.667 14 C 0.198 3.802 15 C -0.505 4.505 16 H 0.061 0.939 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.275 1.275 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.372 0.628 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.199 0.801 32 H 0.323 0.677 33 H 0.026 0.974 34 H -0.017 1.017 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.534 -5.448 -17.421 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.140 3.860 6 H 0.136 0.864 7 O -0.315 6.315 8 C -0.080 4.080 9 C -0.237 4.237 10 C -0.234 4.234 11 C -0.118 4.118 12 O -0.068 6.068 13 N -0.296 5.296 14 C 0.071 3.929 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.199 1.199 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.218 0.782 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.216 0.784 32 H 0.140 0.860 33 H 0.044 0.956 34 H 0.000 1.000 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.388 -4.847 -17.086 17.814 hybrid contribution -0.785 -0.634 0.498 1.125 sum 0.603 -5.481 -16.588 17.480 Atomic orbital electron populations 1.22515 0.98319 1.01401 1.01618 1.21437 0.91513 0.97985 0.91676 0.91048 1.22364 0.94762 1.01833 0.98329 1.20410 0.91975 0.95739 0.77896 0.86442 1.86789 1.73815 1.25393 1.45464 1.24060 1.03531 0.80762 0.99684 1.21595 1.07617 1.00760 0.93686 1.21805 1.07573 0.92637 1.01361 1.23996 1.04284 1.00230 0.83323 1.84005 1.65255 1.26877 1.30619 1.60752 1.54566 1.09948 1.04318 1.19515 0.94793 0.91841 0.86714 1.21190 1.42793 0.96908 0.93513 0.92038 1.24978 0.95830 0.94914 0.98972 1.69969 1.49331 1.09031 1.25780 0.86512 0.79019 0.79821 0.82089 1.20693 1.21484 1.19948 0.92250 0.93314 0.93059 0.91610 0.91551 0.78153 0.83575 0.83735 0.78413 0.86011 0.95621 0.99976 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.16 37.16 0.34 -2.39 16 2 C 0.09 1.43 2.59 -67.72 -0.18 1.25 16 3 H 0.07 1.29 7.80 -51.93 -0.40 0.88 16 4 C -0.13 -1.86 4.64 -26.73 -0.12 -1.99 16 5 C 0.20 2.94 3.43 -27.88 -0.10 2.85 16 6 H 0.12 1.73 8.13 -51.93 -0.42 1.31 16 7 O -0.51 -8.94 11.65 -37.48 -0.44 -9.38 16 8 C -0.03 -0.41 6.18 -35.63 -0.22 -0.63 16 9 C -0.22 -2.73 10.80 -39.71 -0.43 -3.15 16 10 C -0.21 -2.38 10.91 -39.70 -0.43 -2.81 16 11 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 12 O -0.17 -2.33 10.58 3.47 0.04 -2.29 16 13 N -0.67 -13.67 4.56 -108.00 -0.49 -14.16 16 14 C 0.20 5.17 5.24 -4.98 -0.03 5.14 16 15 C -0.51 -14.42 9.32 -34.44 -0.32 -14.74 16 16 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 1.02 7.45 -51.93 -0.39 0.63 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.37 5.64 8.97 45.56 0.41 6.05 16 29 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.32 6.44 8.46 -39.29 -0.33 6.11 16 33 H 0.03 0.74 8.06 -51.92 -0.42 0.32 16 34 H -0.02 -0.48 7.44 -51.93 -0.39 -0.87 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -31.87 299.91 -6.33 -38.20 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.45 Total: 7.83 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -1.23 Total: -15.20 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.24 Total: -40.76 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.40 Total: -11.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.87 -6.33 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.230 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds