Wall clock time and date at job start Sun Mar 29 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47285 * 2 1 4 4 C 1.52998 * 109.47160 * 239.99774 * 2 1 3 5 5 C 1.53002 * 109.47463 * 174.99967 * 4 2 1 6 6 H 1.08998 * 109.46859 * 305.00666 * 5 4 2 7 7 O 1.42900 * 109.46828 * 65.00043 * 5 4 2 8 8 C 1.50695 * 109.47388 * 185.00358 * 5 4 2 9 9 C 1.34515 * 125.79319 * 100.00077 * 8 5 4 10 10 C 1.41376 * 106.84242 * 179.73499 * 9 8 5 11 11 C 1.34516 * 106.84089 * 0.02562 * 10 9 8 12 12 O 1.34298 * 108.42070 * 0.02562 * 11 10 9 13 13 N 1.46896 * 109.46989 * 120.00127 * 2 1 3 14 14 C 1.46897 * 111.00212 * 274.99804 * 13 2 1 15 15 C 1.50693 * 109.47661 * 180.02562 * 14 13 2 16 16 H 1.08001 * 120.00024 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00516 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99503 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00365 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46952 * 89.99690 * 19 17 15 21 21 H 1.48501 * 109.47191 * 209.99971 * 19 17 15 22 22 H 1.48503 * 109.46990 * 330.00035 * 19 17 15 23 23 H 1.09000 * 109.47146 * 299.99989 * 1 2 3 24 24 H 1.09006 * 109.47098 * 60.00098 * 1 2 3 25 25 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47122 * 55.00248 * 4 2 1 27 27 H 1.09001 * 109.47674 * 295.00708 * 4 2 1 28 28 H 0.96699 * 113.99993 * 60.00600 * 7 5 4 29 29 H 1.08003 * 126.57278 * 359.76766 * 9 8 5 30 30 H 1.08003 * 126.57866 * 179.97438 * 10 9 8 31 31 H 1.08002 * 125.78796 * 180.02562 * 11 10 9 32 32 H 1.00906 * 111.00343 * 38.95412 * 13 2 1 33 33 H 1.09007 * 109.46988 * 300.00425 * 14 13 2 34 34 H 1.09004 * 109.47363 * 59.99925 * 14 13 2 35 35 H 0.97001 * 119.99713 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 1 3.8571 0.4357 -1.2677 7 8 4.1392 -1.3165 -0.2102 8 6 4.0570 -1.2158 -2.6043 9 6 4.4042 -0.5323 -3.7096 10 6 4.8088 -1.4865 -4.6711 11 6 4.6840 -2.6962 -4.0962 12 8 4.2274 -2.5262 -2.8447 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5884 -0.5215 3.5557 16 1 2.8388 -1.5693 3.4791 17 6 2.7319 0.1353 4.7595 18 7 2.4275 1.4114 4.8526 19 14 3.3584 -0.7872 6.2581 20 1 4.8394 -0.6932 6.3137 21 1 2.7778 -0.1882 7.4866 22 1 2.9562 -2.2137 6.1651 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -0.2618 -2.1370 27 1 1.7516 -1.7715 -1.2056 28 1 3.9206 -2.2582 -0.1872 29 1 4.3793 0.5398 -3.8376 30 1 5.1514 -1.2833 -5.6750 31 1 4.9123 -3.6435 -4.5620 32 1 1.4495 -1.4980 1.4100 33 1 2.7589 1.0462 2.1182 34 1 1.0871 0.6163 2.5526 35 1 2.5287 1.8736 5.6993 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843101505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:55 Heat of formation + Delta-G solvation = -63.545723 kcal Electronic energy + Delta-G solvation = -17038.973842 eV Core-core repulsion = 14230.589851 eV Total energy + Delta-G solvation = -2808.383991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.46005 -39.08139 -36.98378 -34.88414 -33.96433 -32.56713 -31.14246 -28.67289 -27.83842 -24.77590 -23.54674 -22.66064 -21.64519 -21.32667 -18.79047 -18.40943 -17.21245 -16.79108 -16.66461 -16.35454 -15.86803 -15.26744 -15.13713 -14.78961 -14.05452 -13.92048 -13.70611 -13.49477 -13.38315 -13.14374 -12.79999 -12.70075 -12.59707 -12.43026 -12.21039 -11.89234 -11.62964 -11.16422 -10.94991 -10.80168 -10.60062 -9.36130 -8.80808 -8.16992 -6.26267 0.82811 1.42279 1.44777 1.55225 1.73288 2.10954 2.43649 3.16500 3.57609 3.60722 3.81591 4.02610 4.16875 4.24559 4.29950 4.39135 4.52986 4.56825 4.83807 4.91441 4.93675 5.01942 5.06020 5.12561 5.21518 5.27193 5.32699 5.45642 5.64649 5.69558 6.12404 6.23373 6.59838 6.85747 7.00009 7.02856 7.44227 8.94615 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.005182 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.067318 B = 5402.426956 C = 5881.014431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.082 3.918 3 H 0.053 0.947 4 C -0.118 4.118 5 C 0.201 3.799 6 H 0.109 0.891 7 O -0.540 6.540 8 C -0.054 4.054 9 C -0.220 4.220 10 C -0.226 4.226 11 C -0.046 4.046 12 O -0.188 6.188 13 N -0.660 5.660 14 C 0.216 3.784 15 C -0.525 4.525 16 H 0.064 0.936 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.262 1.262 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.378 0.622 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.237 0.763 32 H 0.329 0.671 33 H -0.010 1.010 34 H -0.043 1.043 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -7.027 -18.780 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 H 0.071 0.929 4 C -0.156 4.156 5 C 0.141 3.859 6 H 0.127 0.873 7 O -0.345 6.345 8 C -0.104 4.104 9 C -0.239 4.239 10 C -0.245 4.245 11 C -0.113 4.113 12 O -0.085 6.085 13 N -0.290 5.290 14 C 0.088 3.912 15 C -0.563 4.563 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.579 5.579 19 Si 0.795 3.205 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.051 0.949 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.175 0.825 30 H 0.188 0.812 31 H 0.253 0.747 32 H 0.146 0.854 33 H 0.009 0.991 34 H -0.025 1.025 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.548 -6.438 -18.475 19.626 hybrid contribution -0.822 -0.131 0.797 1.152 sum 0.727 -6.569 -17.678 18.873 Atomic orbital electron populations 1.22409 0.96668 1.02329 1.01662 1.21538 0.92893 0.97157 0.91292 0.92907 1.22203 0.94273 1.01907 0.97229 1.20334 0.92349 0.95226 0.78004 0.87340 1.86742 1.74590 1.26125 1.47019 1.23738 1.05815 0.81323 0.99549 1.21923 1.06570 1.01726 0.93708 1.22169 1.07680 0.92294 1.02336 1.24840 1.02398 1.01907 0.82169 1.83986 1.65796 1.26664 1.32050 1.60610 1.55589 1.09267 1.03522 1.19097 0.92266 0.91521 0.88304 1.21571 1.42889 0.97195 0.94635 0.91820 1.25929 0.95858 0.95768 1.02367 1.70103 1.50312 1.10731 1.26757 0.85372 0.78322 0.78909 0.77899 1.20248 1.20842 1.18626 0.94923 0.90515 0.91658 0.89175 0.90824 0.77419 0.82489 0.81230 0.74688 0.85385 0.99147 1.02504 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.08 9.16 71.98 0.66 -4.42 16 2 C 0.08 2.75 2.59 44.92 0.12 2.87 16 3 H 0.05 1.97 7.80 -2.39 -0.02 1.95 16 4 C -0.12 -3.13 4.64 30.59 0.14 -2.99 16 5 C 0.20 5.87 3.43 29.85 0.10 5.98 16 6 H 0.11 3.28 8.13 -2.39 -0.02 3.26 16 7 O -0.54 -19.15 11.65 -146.83 -1.71 -20.86 16 8 C -0.05 -1.43 6.18 24.83 0.15 -1.27 16 9 C -0.22 -5.15 10.80 22.19 0.24 -4.91 16 10 C -0.23 -4.39 10.91 22.19 0.24 -4.15 16 11 C -0.05 -0.87 12.09 66.97 0.81 -0.07 16 12 O -0.19 -4.80 10.58 -0.30 0.00 -4.80 16 13 N -0.66 -27.62 4.56 -495.60 -2.26 -29.88 16 14 C 0.22 11.74 5.24 85.56 0.45 12.19 16 15 C -0.52 -30.49 9.32 25.60 0.24 -30.25 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 18 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 19 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 H 0.03 1.12 7.45 -2.39 -0.02 1.11 16 24 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.06 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.38 11.59 8.97 -74.06 -0.66 10.92 16 29 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 30 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.24 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.33 13.14 8.46 -89.69 -0.76 12.38 16 33 H -0.01 -0.58 8.06 -2.38 -0.02 -0.60 16 34 H -0.04 -2.48 7.44 -2.38 -0.02 -2.50 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -69.67 299.91 1.62 -68.06 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.34 Total: 24.50 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.61 Total: -26.68 kcal Atomic # 7 Polarization: -85.77 SS G_CDS: -1.97 Total: -87.75 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.71 Total: -25.66 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.67 1.62 -68.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.510 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds