Wall clock time and date at job start Sun Mar 29 2020 22:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.52997 * 109.47496 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47057 * 174.99885 * 4 2 1 6 6 H 1.09000 * 109.47474 * 54.99879 * 5 4 2 7 7 O 1.42900 * 109.47211 * 294.99800 * 5 4 2 8 8 C 1.50702 * 109.46785 * 175.00094 * 5 4 2 9 9 C 1.34512 * 125.79146 * 264.99695 * 8 5 4 10 10 C 1.41376 * 106.84688 * 179.75198 * 9 8 5 11 11 C 1.34517 * 106.83881 * 0.37683 * 10 9 8 12 12 O 1.34305 * 125.78962 * 84.97917 * 8 5 4 13 13 N 1.46903 * 109.47079 * 119.99637 * 2 1 3 14 14 C 1.46901 * 111.00431 * 275.00178 * 13 2 1 15 15 C 1.50698 * 109.47304 * 179.97438 * 14 13 2 16 16 H 1.08004 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00082 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00152 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99983 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 89.99684 * 19 17 15 21 21 H 1.48495 * 109.47485 * 209.99690 * 19 17 15 22 22 H 1.48500 * 109.47332 * 329.99890 * 19 17 15 23 23 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47721 * 299.99946 * 1 2 3 25 25 H 1.08999 * 109.47258 * 60.00600 * 1 2 3 26 26 H 1.09004 * 109.47116 * 54.99810 * 4 2 1 27 27 H 1.09004 * 109.47097 * 294.99880 * 4 2 1 28 28 H 0.96706 * 113.99859 * 300.00327 * 7 5 4 29 29 H 1.08006 * 126.57585 * 359.97438 * 9 8 5 30 30 H 1.07998 * 126.58562 * 180.23597 * 10 9 8 31 31 H 1.08002 * 125.79423 * 179.89440 * 11 10 9 32 32 H 1.00896 * 110.99766 * 38.96135 * 13 2 1 33 33 H 1.08999 * 109.47018 * 300.00630 * 14 13 2 34 34 H 1.09005 * 109.46608 * 59.99981 * 14 13 2 35 35 H 0.97003 * 119.99892 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9955 -0.9921 -0.3867 7 8 3.9385 0.7551 -1.4879 8 6 4.0774 -1.4257 -2.4746 9 6 4.5230 -2.6934 -2.4119 10 6 4.8974 -3.0615 -3.7245 11 6 4.6662 -1.9940 -4.5096 12 8 4.1665 -1.0072 -3.7477 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 2.5873 -0.5217 3.5561 16 1 2.8369 -1.5697 3.4797 17 6 2.7304 0.1350 4.7599 18 7 3.1714 -0.5144 5.8149 19 14 2.2979 1.9474 4.8922 20 1 0.8683 2.0890 5.2684 21 1 3.1480 2.5849 5.9295 22 1 2.5333 2.6094 3.5839 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.6054 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.5895 1.1583 -2.2946 29 1 4.5800 -3.3125 -1.5287 30 1 5.2952 -4.0158 -4.0367 31 1 4.8471 -1.9409 -5.5730 32 1 1.4496 -1.4979 1.4100 33 1 2.7587 1.0463 2.1183 34 1 1.0869 0.6163 2.5525 35 1 3.2718 -0.0524 6.6619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843101508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:01 Heat of formation + Delta-G solvation = -43.137122 kcal Electronic energy + Delta-G solvation = -16991.664321 eV Core-core repulsion = 14184.165313 eV Total energy + Delta-G solvation = -2807.499008 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.56205 -37.99368 -35.89091 -33.10204 -32.80215 -31.28698 -30.10770 -27.67094 -26.37123 -23.63975 -21.74900 -21.29482 -20.43991 -20.33607 -17.89416 -16.76744 -16.17171 -15.85394 -15.48356 -14.83486 -14.47888 -14.13288 -13.58806 -13.33119 -13.11627 -12.80572 -12.59860 -12.53876 -12.00502 -11.68896 -11.63976 -11.55772 -11.29408 -10.69949 -10.55602 -10.24473 -10.07613 -9.89898 -9.74084 -9.25684 -8.58269 -8.44526 -7.46788 -6.03750 -4.01347 1.72150 2.62687 2.95435 3.30489 3.38503 3.42348 4.44702 4.52012 4.59623 4.93588 5.02571 5.03550 5.22470 5.29799 5.36750 5.51273 5.66198 5.74135 5.80321 5.88003 5.96868 6.05129 6.11650 6.31419 6.34179 6.47123 6.51416 6.84587 7.07601 7.12091 7.64478 7.72744 7.91353 8.35793 8.66834 9.04031 9.58735 11.09605 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.005275 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.550404 B = 5306.674044 C = 5564.026147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.080 3.920 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.197 3.803 6 H 0.146 0.854 7 O -0.546 6.546 8 C -0.035 4.035 9 C -0.207 4.207 10 C -0.212 4.212 11 C -0.053 4.053 12 O -0.177 6.177 13 N -0.674 5.674 14 C 0.165 3.835 15 C -0.515 4.515 16 H 0.078 0.922 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.266 1.266 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.371 0.629 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.199 0.801 32 H 0.335 0.665 33 H 0.028 0.972 34 H -0.021 1.021 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 -1.216 -19.754 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 H 0.098 0.902 4 C -0.170 4.170 5 C 0.137 3.863 6 H 0.164 0.836 7 O -0.350 6.350 8 C -0.086 4.086 9 C -0.226 4.226 10 C -0.231 4.231 11 C -0.120 4.120 12 O -0.073 6.073 13 N -0.304 5.304 14 C 0.037 3.963 15 C -0.553 4.553 16 H 0.096 0.904 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.704 3.296 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.190 1.190 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.217 0.783 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.216 0.784 32 H 0.152 0.848 33 H 0.046 0.954 34 H -0.003 1.003 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.403 -0.923 -19.237 19.263 hybrid contribution -1.360 0.708 -0.182 1.544 sum -1.763 -0.215 -19.419 19.500 Atomic orbital electron populations 1.22501 0.97988 1.01726 1.01671 1.21511 0.91769 0.98632 0.91205 0.90183 1.22285 0.94430 1.02155 0.98092 1.20741 0.94160 0.79507 0.91858 0.83635 1.86693 1.77063 1.24441 1.46827 1.23847 1.04282 0.96305 0.84126 1.21667 1.05971 0.96143 0.98824 1.21843 1.07190 1.00483 0.93573 1.23979 1.03774 0.87064 0.97186 1.83966 1.64963 1.40166 1.18241 1.60562 1.55574 1.10109 1.04178 1.20021 0.94375 0.92960 0.88921 1.21069 1.43602 0.98774 0.91895 0.90351 1.24894 0.94809 0.97932 0.95664 1.69900 1.46732 1.36542 1.00866 0.86833 0.78435 0.86093 0.78219 1.20450 1.21195 1.19037 0.92727 0.92387 0.93033 0.91932 0.90689 0.78309 0.83094 0.83597 0.78392 0.84792 0.95379 1.00317 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.16 37.16 0.34 -2.20 16 2 C 0.08 1.27 2.54 -67.71 -0.17 1.10 16 3 H 0.08 1.38 7.35 -51.93 -0.38 1.00 16 4 C -0.13 -1.76 4.55 -26.73 -0.12 -1.88 16 5 C 0.20 2.87 3.37 -27.88 -0.09 2.77 16 6 H 0.15 2.47 7.62 -51.93 -0.40 2.07 16 7 O -0.55 -8.22 12.77 -40.01 -0.51 -8.73 16 8 C -0.04 -0.48 6.20 -35.62 -0.22 -0.71 16 9 C -0.21 -2.74 10.81 -39.71 -0.43 -3.17 16 10 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 11 C -0.05 -0.55 12.09 29.42 0.36 -0.20 16 12 O -0.18 -2.28 10.52 0.91 0.01 -2.27 16 13 N -0.67 -13.28 5.61 -107.99 -0.61 -13.89 16 14 C 0.16 3.97 4.31 -4.98 -0.02 3.95 16 15 C -0.52 -14.68 9.87 -34.44 -0.34 -15.02 16 16 H 0.08 2.41 8.06 -52.48 -0.42 1.98 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 19 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 24 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.37 4.14 8.93 45.56 0.41 4.55 16 29 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.33 6.41 8.46 -39.29 -0.33 6.07 16 33 H 0.03 0.71 7.12 -51.93 -0.37 0.34 16 34 H -0.02 -0.50 6.86 -51.93 -0.36 -0.85 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 297.25 15.07 4.48 4.48 Total: -1.00 -32.09 297.25 -6.12 -38.21 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.36 Total: 8.38 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -1.23 Total: -16.27 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.17 Total: -40.96 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.50 Total: -11.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.09 -6.12 -38.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.926 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds