Wall clock time and date at job start Sun Mar 29 2020 22:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.52997 * 109.47496 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47057 * 174.99885 * 4 2 1 6 6 H 1.09000 * 109.47474 * 54.99879 * 5 4 2 7 7 O 1.42900 * 109.47211 * 294.99800 * 5 4 2 8 8 C 1.50702 * 109.46785 * 175.00094 * 5 4 2 9 9 C 1.34512 * 125.79146 * 264.99695 * 8 5 4 10 10 C 1.41376 * 106.84688 * 179.75198 * 9 8 5 11 11 C 1.34517 * 106.83881 * 0.37683 * 10 9 8 12 12 O 1.34305 * 125.78962 * 84.97917 * 8 5 4 13 13 N 1.46903 * 109.47079 * 119.99637 * 2 1 3 14 14 C 1.46901 * 111.00431 * 275.00178 * 13 2 1 15 15 C 1.50698 * 109.47304 * 179.97438 * 14 13 2 16 16 H 1.08004 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00082 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00152 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99983 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47285 * 89.99684 * 19 17 15 21 21 H 1.48495 * 109.47485 * 209.99690 * 19 17 15 22 22 H 1.48500 * 109.47332 * 329.99890 * 19 17 15 23 23 H 1.09005 * 109.46781 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47721 * 299.99946 * 1 2 3 25 25 H 1.08999 * 109.47258 * 60.00600 * 1 2 3 26 26 H 1.09004 * 109.47116 * 54.99810 * 4 2 1 27 27 H 1.09004 * 109.47097 * 294.99880 * 4 2 1 28 28 H 0.96706 * 113.99859 * 300.00327 * 7 5 4 29 29 H 1.08006 * 126.57585 * 359.97438 * 9 8 5 30 30 H 1.07998 * 126.58562 * 180.23597 * 10 9 8 31 31 H 1.08002 * 125.79423 * 179.89440 * 11 10 9 32 32 H 1.00896 * 110.99766 * 38.96135 * 13 2 1 33 33 H 1.08999 * 109.47018 * 300.00630 * 14 13 2 34 34 H 1.09005 * 109.46608 * 59.99981 * 14 13 2 35 35 H 0.97003 * 119.99892 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9955 -0.9921 -0.3867 7 8 3.9385 0.7551 -1.4879 8 6 4.0774 -1.4257 -2.4746 9 6 4.5230 -2.6934 -2.4119 10 6 4.8974 -3.0615 -3.7245 11 6 4.6662 -1.9940 -4.5096 12 8 4.1665 -1.0072 -3.7477 13 7 2.0196 -0.6924 1.1995 14 6 2.0824 0.2226 2.3470 15 6 2.5873 -0.5217 3.5561 16 1 2.8369 -1.5697 3.4797 17 6 2.7304 0.1350 4.7599 18 7 3.1714 -0.5144 5.8149 19 14 2.2979 1.9474 4.8922 20 1 0.8683 2.0890 5.2684 21 1 3.1480 2.5849 5.9295 22 1 2.5333 2.6094 3.5839 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 1.6054 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.5895 1.1583 -2.2946 29 1 4.5800 -3.3125 -1.5287 30 1 5.2952 -4.0158 -4.0367 31 1 4.8471 -1.9409 -5.5730 32 1 1.4496 -1.4979 1.4100 33 1 2.7587 1.0463 2.1183 34 1 1.0869 0.6163 2.5525 35 1 3.2718 -0.0524 6.6619 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843101508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:00 Heat of formation + Delta-G solvation = -67.655140 kcal Electronic energy + Delta-G solvation = -16992.727502 eV Core-core repulsion = 14184.165313 eV Total energy + Delta-G solvation = -2808.562189 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.48950 -39.23085 -37.28431 -34.89298 -33.99829 -32.75822 -31.40110 -28.74110 -28.23477 -24.76834 -23.26952 -22.66141 -21.66931 -21.39857 -19.04644 -18.70730 -17.31604 -16.84030 -16.78716 -16.33812 -15.90311 -15.56526 -15.16450 -14.75983 -14.53735 -14.06750 -13.74531 -13.65604 -13.41366 -13.35814 -12.92450 -12.72165 -12.56160 -12.54952 -12.09276 -11.77394 -11.63468 -11.38490 -11.20099 -10.83741 -10.80450 -9.41174 -9.04066 -8.29182 -6.32615 0.79367 1.33684 1.36935 1.48042 1.70830 2.04196 2.34690 3.05440 3.43447 3.55935 3.62646 4.02094 4.14388 4.19829 4.24659 4.38801 4.52729 4.55018 4.79228 4.85471 4.89439 4.96918 4.99926 5.02461 5.12969 5.24369 5.27941 5.31920 5.56341 5.61092 5.99915 6.18543 6.60103 6.69844 6.77967 6.82632 7.32614 8.87614 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.033304 B = 0.005275 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.550404 B = 5306.674044 C = 5564.026147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.079 3.921 3 H 0.068 0.932 4 C -0.118 4.118 5 C 0.201 3.799 6 H 0.113 0.887 7 O -0.565 6.565 8 C -0.054 4.054 9 C -0.222 4.222 10 C -0.227 4.227 11 C -0.041 4.041 12 O -0.184 6.184 13 N -0.681 5.681 14 C 0.179 3.821 15 C -0.525 4.525 16 H 0.039 0.961 17 C 0.009 3.991 18 N -0.948 5.948 19 Si 0.948 3.052 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.253 1.253 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.387 0.613 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.242 0.758 32 H 0.337 0.663 33 H 0.019 0.981 34 H -0.014 1.014 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -0.131 -22.274 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.156 4.156 5 C 0.142 3.858 6 H 0.131 0.869 7 O -0.371 6.371 8 C -0.104 4.104 9 C -0.241 4.241 10 C -0.246 4.246 11 C -0.107 4.107 12 O -0.081 6.081 13 N -0.311 5.311 14 C 0.050 3.950 15 C -0.563 4.563 16 H 0.057 0.943 17 C -0.189 4.189 18 N -0.589 5.589 19 Si 0.772 3.228 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.177 1.177 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.236 0.764 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.258 0.742 32 H 0.154 0.846 33 H 0.037 0.963 34 H 0.003 0.997 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.318 0.156 -21.791 21.831 hybrid contribution -1.012 0.259 0.514 1.164 sum -2.330 0.415 -21.277 21.408 Atomic orbital electron populations 1.22419 0.96076 1.02533 1.02243 1.21584 0.93308 0.97872 0.90300 0.91364 1.22168 0.93578 1.02245 0.97613 1.20417 0.94717 0.79445 0.91213 0.86949 1.86642 1.77599 1.24753 1.48147 1.23573 1.05931 0.96392 0.84549 1.21909 1.05994 0.96260 0.99958 1.22164 1.07757 1.01984 0.92663 1.24860 1.01338 0.85917 0.98616 1.83957 1.65297 1.40963 1.17861 1.60438 1.56820 1.09837 1.04035 1.19702 0.93893 0.92687 0.88699 1.21373 1.43419 0.97528 0.94001 0.94278 1.25841 0.94658 1.03220 0.95162 1.70051 1.48319 1.38845 1.01665 0.85701 0.78764 0.79661 0.78723 1.18979 1.20730 1.17723 0.91837 0.93971 0.90259 0.89248 0.90340 0.76422 0.83475 0.81382 0.74165 0.84571 0.96344 0.99676 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 9.16 71.98 0.66 -3.84 16 2 C 0.08 2.43 2.54 44.91 0.11 2.55 16 3 H 0.07 2.27 7.35 -2.38 -0.02 2.25 16 4 C -0.12 -2.97 4.55 30.59 0.14 -2.83 16 5 C 0.20 5.84 3.37 29.85 0.10 5.94 16 6 H 0.11 3.99 7.62 -2.39 -0.02 3.97 16 7 O -0.56 -16.64 12.77 -144.41 -1.84 -18.48 16 8 C -0.05 -1.45 6.20 24.83 0.15 -1.30 16 9 C -0.22 -5.77 10.81 22.19 0.24 -5.53 16 10 C -0.23 -4.64 10.91 22.19 0.24 -4.40 16 11 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 12 O -0.18 -4.35 10.52 1.99 0.02 -4.33 16 13 N -0.68 -27.02 5.61 -495.57 -2.78 -29.80 16 14 C 0.18 8.63 4.31 85.56 0.37 9.00 16 15 C -0.52 -30.79 9.87 25.60 0.25 -30.53 16 16 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 17 C 0.01 0.51 5.47 84.65 0.46 0.97 16 18 N -0.95 -60.08 13.96 21.44 0.30 -59.78 16 19 Si 0.95 45.04 27.47 68.60 1.88 46.93 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 23 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 24 H 0.04 1.22 7.45 -2.39 -0.02 1.20 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.39 8.08 8.93 -74.05 -0.66 7.42 16 29 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 31 H 0.24 1.96 8.06 -2.91 -0.02 1.93 16 32 H 0.34 13.04 8.46 -89.70 -0.76 12.28 16 33 H 0.02 0.93 7.12 -2.39 -0.02 0.91 16 34 H -0.01 -0.67 6.86 -2.38 -0.02 -0.69 16 35 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -70.69 297.25 0.74 -69.95 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.38 Total: 25.41 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 3.54 Total: -29.90 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.48 Total: -89.58 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -1.82 Total: -22.82 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -70.69 0.74 -69.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843101508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.296 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds