Wall clock time and date at job start Sun Mar 29 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47264 * 120.00133 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 C 1.50703 * 109.47466 * 180.02562 * 5 2 1 7 7 C 1.35347 * 126.74938 * 124.71457 * 6 5 2 8 8 N 1.35316 * 106.17411 * 179.85216 * 7 6 5 9 9 C 1.46499 * 125.87113 * 180.11465 * 8 7 6 10 10 C 1.53003 * 109.46792 * 125.32717 * 9 8 7 11 11 C 1.50704 * 109.46724 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99971 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99878 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99967 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99953 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47146 * 90.00150 * 15 13 11 17 17 H 1.48497 * 109.46874 * 210.00190 * 15 13 11 18 18 H 1.48506 * 109.47044 * 329.99992 * 15 13 11 19 19 N 1.28720 * 108.26097 * 0.41923 * 8 7 6 20 20 N 1.28632 * 110.17674 * 359.73119 * 19 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.96702 * 113.99404 * 59.99785 * 4 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 5 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 5 2 1 30 30 H 1.07994 * 126.91480 * 0.02562 * 7 6 5 31 31 H 1.08996 * 109.47287 * 245.32983 * 9 8 7 32 32 H 1.09000 * 109.47023 * 5.33047 * 9 8 7 33 33 H 1.09000 * 109.46967 * 300.00058 * 10 9 8 34 34 H 1.08994 * 109.47444 * 60.00522 * 10 9 8 35 35 H 0.96997 * 119.99967 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5470 -0.7218 -1.2489 7 6 4.3565 -1.8029 -1.3380 8 7 5.6235 -1.3292 -1.3020 9 6 6.8440 -2.1363 -1.3720 10 6 7.7272 -1.6273 -2.5131 11 6 8.9825 -2.4580 -2.5855 12 1 9.1353 -3.2677 -1.8873 13 6 9.9364 -2.1837 -3.5425 14 7 11.0321 -2.9083 -3.6055 15 14 9.6725 -0.7828 -4.7497 16 1 10.2362 0.4698 -4.1854 17 1 10.3532 -1.0987 -6.0311 18 1 8.2181 -0.6058 -4.9923 19 7 5.5720 -0.0480 -1.1891 20 7 4.3478 0.3455 -1.1547 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.7210 -1.5953 1.2328 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 4.0523 -2.8356 -1.4238 31 1 7.3864 -2.0575 -0.4299 32 1 6.5806 -3.1783 -1.5536 33 1 7.1848 -1.7062 -3.4552 34 1 7.9906 -0.5854 -2.3316 35 1 11.7034 -2.7150 -4.2785 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849140948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:09 Heat of formation + Delta-G solvation = 32.128696 kcal Electronic energy + Delta-G solvation = -16928.223448 eV Core-core repulsion = 14156.280963 eV Total energy + Delta-G solvation = -2771.942486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.84904 -38.43153 -35.19718 -33.25640 -32.62976 -31.12335 -30.34957 -27.38247 -26.98934 -25.73524 -22.14788 -21.63851 -20.62728 -19.86597 -17.50238 -16.65613 -16.11791 -15.86596 -15.14925 -14.77040 -14.44579 -14.32321 -13.77917 -13.45099 -12.90250 -12.71524 -12.24273 -12.14036 -12.02807 -11.84489 -11.75292 -11.42229 -11.14121 -10.81698 -10.65779 -10.46551 -10.28727 -9.99996 -9.91779 -9.50287 -9.38755 -8.76037 -8.70009 -6.21850 -4.24217 2.06413 2.85765 2.92856 3.24678 3.31894 3.36833 4.18311 4.32474 4.54667 4.60012 4.90310 4.96284 5.10060 5.14138 5.21289 5.34645 5.48937 5.59264 5.64004 5.74086 5.80782 5.85332 6.02506 6.06045 6.06906 6.29167 6.35426 6.72021 6.85640 7.06310 7.10776 7.53754 7.64764 8.26790 8.77381 8.96519 9.38326 10.90301 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.054610 B = 0.004699 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.601568 B = 5956.658717 C = 6176.979960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 C -0.150 4.150 4 O -0.555 6.555 5 C -0.055 4.055 6 C -0.023 4.023 7 C -0.056 4.056 8 N -0.273 5.273 9 C 0.122 3.878 10 C -0.020 4.020 11 C -0.531 4.531 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.879 3.121 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.267 1.267 19 N -0.080 5.080 20 N -0.277 5.277 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.369 0.631 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.182 0.818 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.023 0.977 34 H 0.032 0.968 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.220 1.816 5.046 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 C -0.208 4.208 4 O -0.360 6.360 5 C -0.095 4.095 6 C -0.162 4.162 7 C -0.207 4.207 8 N -0.066 5.066 9 C 0.002 3.998 10 C -0.058 4.058 11 C -0.570 4.570 12 H 0.095 0.905 13 C -0.127 4.127 14 N -0.532 5.532 15 Si 0.706 3.294 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.191 1.191 19 N -0.060 5.060 20 N -0.143 5.143 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.083 0.917 27 H 0.216 0.784 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.199 0.801 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.882 3.659 5.163 19.914 hybrid contribution -0.756 -1.122 -0.972 1.666 sum -19.638 2.537 4.191 20.240 Atomic orbital electron populations 1.22503 0.95936 1.02177 1.02858 1.21160 0.91697 0.93830 0.84108 1.21979 1.05412 0.92275 1.01088 1.86640 1.77316 1.28268 1.43741 1.20567 0.87851 1.01558 0.99486 1.21536 0.96814 0.89620 1.08231 1.23300 0.84388 1.01474 1.11587 1.47849 1.08325 1.06558 1.43862 1.22488 0.80490 0.93178 1.03605 1.19859 0.95193 0.98298 0.92459 1.20802 1.01074 1.17131 1.17946 0.90459 1.24914 0.94659 0.96091 0.97034 1.69880 1.08672 1.39575 1.35053 0.86783 0.78976 0.82867 0.80781 1.19806 1.21086 1.19117 1.78283 1.15408 0.93482 1.18782 1.74873 0.95581 1.26045 1.17786 0.91534 0.91785 0.92484 0.92996 0.88467 0.91674 0.78439 0.90338 0.89605 0.80122 0.88674 0.88239 0.95881 0.94931 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.82 37.16 0.33 -1.05 16 2 C 0.13 1.42 1.08 -90.63 -0.10 1.32 16 3 C -0.15 -1.88 8.46 37.15 0.31 -1.56 16 4 O -0.55 -6.60 12.60 -35.23 -0.44 -7.04 16 5 C -0.06 -0.59 5.04 -27.88 -0.14 -0.73 16 6 C -0.02 -0.35 6.03 -82.78 -0.50 -0.84 16 7 C -0.06 -0.83 11.49 -17.05 -0.20 -1.02 16 8 N -0.27 -4.95 3.44 -61.26 -0.21 -5.16 16 9 C 0.12 2.24 6.39 -4.04 -0.03 2.22 16 10 C -0.02 -0.46 4.17 -27.88 -0.12 -0.57 16 11 C -0.53 -14.31 9.66 -34.44 -0.33 -14.64 16 12 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 15 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 19 N -0.08 -1.63 12.91 60.35 0.78 -0.85 16 20 N -0.28 -5.13 9.59 33.29 0.32 -4.81 16 21 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 1.53 5.32 -51.93 -0.28 1.25 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.37 2.86 9.05 45.56 0.41 3.27 16 28 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 32 H 0.10 1.59 8.07 -51.93 -0.42 1.17 16 33 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 34 H 0.03 0.79 7.55 -51.93 -0.39 0.40 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -32.59 293.99 -4.32 -36.91 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.44 Total: 0.31 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.86 Total: -14.84 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 1.66 Total: -36.65 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.44 Total: -7.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.59 -4.32 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849140948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.043 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds