Wall clock time and date at job start Sun Mar 29 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42905 * 109.47264 * 120.00133 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 C 1.50703 * 109.47466 * 180.02562 * 5 2 1 7 7 C 1.35347 * 126.74938 * 124.71457 * 6 5 2 8 8 N 1.35316 * 106.17411 * 179.85216 * 7 6 5 9 9 C 1.46499 * 125.87113 * 180.11465 * 8 7 6 10 10 C 1.53003 * 109.46792 * 125.32717 * 9 8 7 11 11 C 1.50704 * 109.46724 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99971 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99878 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99967 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99953 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47146 * 90.00150 * 15 13 11 17 17 H 1.48497 * 109.46874 * 210.00190 * 15 13 11 18 18 H 1.48506 * 109.47044 * 329.99992 * 15 13 11 19 19 N 1.28720 * 108.26097 * 0.41923 * 8 7 6 20 20 N 1.28632 * 110.17674 * 359.73119 * 19 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 0.96702 * 113.99404 * 59.99785 * 4 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 5 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 5 2 1 30 30 H 1.07994 * 126.91480 * 0.02562 * 7 6 5 31 31 H 1.08996 * 109.47287 * 245.32983 * 9 8 7 32 32 H 1.09000 * 109.47023 * 5.33047 * 9 8 7 33 33 H 1.09000 * 109.46967 * 300.00058 * 10 9 8 34 34 H 1.08994 * 109.47444 * 60.00522 * 10 9 8 35 35 H 0.96997 * 119.99967 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5470 -0.7218 -1.2489 7 6 4.3565 -1.8029 -1.3380 8 7 5.6235 -1.3292 -1.3020 9 6 6.8440 -2.1363 -1.3720 10 6 7.7272 -1.6273 -2.5131 11 6 8.9825 -2.4580 -2.5855 12 1 9.1353 -3.2677 -1.8873 13 6 9.9364 -2.1837 -3.5425 14 7 11.0321 -2.9083 -3.6055 15 14 9.6725 -0.7828 -4.7497 16 1 10.2362 0.4698 -4.1854 17 1 10.3532 -1.0987 -6.0311 18 1 8.2181 -0.6058 -4.9923 19 7 5.5720 -0.0480 -1.1891 20 7 4.3478 0.3455 -1.1547 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.7210 -1.5953 1.2328 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 4.0523 -2.8356 -1.4238 31 1 7.3864 -2.0575 -0.4299 32 1 6.5806 -3.1783 -1.5536 33 1 7.1848 -1.7062 -3.4552 34 1 7.9906 -0.5854 -2.3316 35 1 11.7034 -2.7150 -4.2785 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849140948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:09 Heat of formation + Delta-G solvation = 7.887553 kcal Electronic energy + Delta-G solvation = -16929.274623 eV Core-core repulsion = 14156.280963 eV Total energy + Delta-G solvation = -2772.993661 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.12179 -39.26430 -36.73043 -34.85513 -33.92163 -32.24462 -31.99849 -28.23919 -28.00675 -27.35406 -23.85891 -22.82422 -21.85959 -20.96642 -19.30550 -17.92309 -17.41418 -17.09237 -16.32724 -15.94774 -15.79265 -15.61669 -15.06563 -14.80507 -14.59844 -13.81687 -13.47691 -13.17517 -13.14182 -12.95836 -12.82967 -12.62638 -12.50472 -12.44605 -12.09783 -11.92963 -11.63104 -11.52521 -11.50747 -10.86068 -10.83756 -10.78786 -9.93160 -8.38494 -6.43896 0.80768 1.29713 1.32758 1.41986 1.61354 1.65914 2.27445 2.97221 3.37116 3.59491 3.72983 3.94187 4.03882 4.16293 4.18440 4.30143 4.40188 4.50739 4.69488 4.77980 4.84988 4.96310 5.02648 5.04752 5.06973 5.21091 5.29415 5.33013 5.37628 5.44129 5.70046 5.81736 6.12141 6.63040 7.03271 7.21825 7.67452 8.76781 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.054610 B = 0.004699 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.601568 B = 5956.658717 C = 6176.979960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 C -0.154 4.154 4 O -0.580 6.580 5 C -0.054 4.054 6 C -0.027 4.027 7 C -0.045 4.045 8 N -0.283 5.283 9 C 0.132 3.868 10 C -0.013 4.013 11 C -0.531 4.531 12 H 0.056 0.944 13 C 0.022 3.978 14 N -0.937 5.937 15 Si 0.938 3.062 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.261 1.261 19 N -0.137 5.137 20 N -0.295 5.295 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.387 0.613 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.129 0.871 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.992 1.122 4.618 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.093 3.907 3 C -0.212 4.212 4 O -0.388 6.388 5 C -0.093 4.093 6 C -0.167 4.167 7 C -0.197 4.197 8 N -0.076 5.076 9 C 0.012 3.988 10 C -0.051 4.051 11 C -0.570 4.570 12 H 0.075 0.925 13 C -0.177 4.177 14 N -0.577 5.577 15 Si 0.763 3.237 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.185 1.185 19 N -0.115 5.115 20 N -0.160 5.160 21 H 0.095 0.905 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.236 0.764 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.244 0.756 31 H 0.113 0.887 32 H 0.147 0.853 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.668 2.975 4.743 22.379 hybrid contribution 0.032 -0.941 -0.756 1.208 sum -21.636 2.033 3.987 22.094 Atomic orbital electron populations 1.22408 0.93314 1.03771 1.03121 1.21159 0.93483 0.92276 0.83824 1.21991 1.03136 0.94522 1.01535 1.86603 1.77981 1.29868 1.44329 1.20786 0.84753 1.04052 0.99695 1.22325 0.98808 0.88678 1.06840 1.24111 0.82786 1.03513 1.09279 1.47774 1.09151 1.06197 1.44514 1.22235 0.80579 0.94320 1.01623 1.19653 0.94419 0.96774 0.94267 1.21114 1.02433 1.16614 1.16794 0.92533 1.25714 0.94565 0.98417 0.99041 1.69992 1.09804 1.41528 1.36349 0.85847 0.79100 0.79882 0.78918 1.19721 1.20216 1.18521 1.78283 1.16618 0.94771 1.21827 1.74877 0.95691 1.27644 1.17831 0.90541 0.92299 0.90228 0.93176 0.91894 0.90697 0.76405 0.86577 0.88692 0.75631 0.88725 0.85251 0.96197 0.96483 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 8.82 71.98 0.63 -1.40 16 2 C 0.13 2.49 1.08 -10.80 -0.01 2.48 16 3 C -0.15 -3.74 8.46 71.98 0.61 -3.13 16 4 O -0.58 -12.46 12.60 -148.98 -1.88 -14.34 16 5 C -0.05 -0.95 5.04 29.85 0.15 -0.80 16 6 C -0.03 -0.74 6.03 41.60 0.25 -0.49 16 7 C -0.05 -1.20 11.49 83.49 0.96 -0.24 16 8 N -0.28 -9.88 3.44 -347.74 -1.20 -11.08 16 9 C 0.13 4.70 6.39 86.38 0.55 5.25 16 10 C -0.01 -0.58 4.17 29.85 0.12 -0.46 16 11 C -0.53 -28.76 9.66 25.60 0.25 -28.51 16 12 H 0.06 3.22 7.99 -2.91 -0.02 3.20 16 13 C 0.02 1.23 5.47 84.66 0.46 1.69 16 14 N -0.94 -56.46 13.96 21.45 0.30 -56.16 16 15 Si 0.94 44.55 27.47 68.60 1.88 46.43 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 19 N -0.14 -5.56 12.91 37.02 0.48 -5.08 16 20 N -0.30 -10.82 9.59 -48.60 -0.47 -11.28 16 21 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 2.00 5.32 -2.39 -0.01 1.98 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.39 4.74 9.05 -74.06 -0.67 4.07 16 28 H 0.12 1.18 8.12 -2.39 -0.02 1.16 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.13 3.79 8.07 -2.39 -0.02 3.77 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 34 H 0.02 0.82 7.55 -2.39 -0.02 0.80 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -72.38 293.99 3.46 -68.92 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.36 Total: 8.19 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.98 Total: -25.60 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -0.88 Total: -83.61 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.88 Total: -14.34 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -72.38 3.46 -68.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849140948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.810 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds