Wall clock time and date at job start Sun Mar 29 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 60.00064 * 3 2 1 5 5 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 6 6 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 7 7 C 1.35351 * 126.74913 * 119.70904 * 6 3 2 8 8 N 1.35307 * 106.17475 * 179.85338 * 7 6 3 9 9 C 1.46505 * 125.86836 * 180.12043 * 8 7 6 10 10 C 1.53000 * 109.46980 * 125.33042 * 9 8 7 11 11 C 1.50703 * 109.47111 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46958 * 60.00113 * 15 13 11 17 17 H 1.48497 * 109.47135 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46962 * 299.99948 * 15 13 11 19 19 N 1.28714 * 108.26322 * 0.42109 * 8 7 6 20 20 N 1.28637 * 110.17832 * 359.73630 * 19 8 7 21 21 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 29 29 H 0.96696 * 114.00485 * 299.99339 * 5 3 2 30 30 H 1.08007 * 126.90952 * 0.02562 * 7 6 3 31 31 H 1.09007 * 109.47118 * 245.33027 * 9 8 7 32 32 H 1.08996 * 109.46861 * 5.32864 * 9 8 7 33 33 H 1.08994 * 109.46828 * 299.99845 * 10 9 8 34 34 H 1.09000 * 109.46998 * 60.00224 * 10 9 8 35 35 H 0.97004 * 119.99976 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5470 1.4426 0.0006 7 6 4.3572 1.9799 -0.9411 8 7 5.6238 1.7472 -0.5259 9 6 6.8449 2.1518 -1.2269 10 6 7.7273 2.9710 -0.2829 11 6 8.9832 3.3876 -1.0042 12 1 9.1364 3.0975 -2.0332 13 6 9.9365 4.1392 -0.3506 14 7 9.7497 4.4929 0.9022 15 14 11.4936 4.6550 -1.2446 16 1 11.1356 5.4792 -2.4268 17 1 12.3500 5.4502 -0.3284 18 1 12.2326 3.4462 -1.6893 19 7 5.5714 1.1038 0.5877 20 7 4.3470 0.9063 0.9289 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 1.6499 2.1393 27 1 1.8937 3.1912 1.2495 28 1 0.4399 2.1637 1.2493 29 1 1.8489 1.7128 -1.9979 30 1 4.0537 2.4938 -1.8413 31 1 7.3876 1.2644 -1.5530 32 1 6.5822 2.7564 -2.0949 33 1 7.1847 3.8582 0.0431 34 1 7.9901 2.3663 0.5851 35 1 10.4203 5.0219 1.3620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849141152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:11 Heat of formation + Delta-G solvation = 25.158062 kcal Electronic energy + Delta-G solvation = -16917.758881 eV Core-core repulsion = 14145.514126 eV Total energy + Delta-G solvation = -2772.244755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.85524 -38.40636 -35.03311 -33.36890 -32.77125 -30.87860 -30.00899 -28.81118 -25.57466 -24.88932 -22.60809 -21.85579 -20.96246 -19.71771 -17.48032 -16.68550 -15.94371 -15.80880 -15.20493 -15.05757 -14.57049 -14.13555 -13.56044 -13.38066 -12.64291 -12.50526 -12.31793 -12.11804 -11.79995 -11.73296 -11.56033 -11.13670 -11.02367 -10.90607 -10.74311 -10.65599 -10.33524 -10.17295 -9.99786 -9.47094 -9.32623 -8.80995 -8.54078 -6.18231 -4.25529 2.06711 2.85225 2.94375 3.23305 3.28998 3.30339 4.13080 4.31084 4.41532 4.77834 4.92982 5.03662 5.17761 5.25946 5.30769 5.40438 5.57944 5.62692 5.79956 5.82540 5.90018 5.94498 6.00014 6.13591 6.22550 6.26469 6.38914 6.45371 7.00583 7.38159 7.47282 7.53626 7.76210 8.08013 8.79407 8.97128 9.40186 10.92746 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.060458 B = 0.004354 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.018706 B = 6429.737869 C = 6499.928020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.226 3.774 4 C -0.134 4.134 5 O -0.551 6.551 6 C -0.066 4.066 7 C -0.049 4.049 8 N -0.268 5.268 9 C 0.111 3.889 10 C 0.015 3.985 11 C -0.534 4.534 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.072 5.072 20 N -0.276 5.276 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.375 0.625 30 H 0.184 0.816 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.038 0.962 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 -6.091 -5.046 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.183 3.817 4 C -0.191 4.191 5 O -0.355 6.355 6 C -0.205 4.205 7 C -0.201 4.201 8 N -0.061 5.061 9 C -0.008 4.008 10 C -0.022 4.022 11 C -0.573 4.573 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.052 5.052 20 N -0.142 5.142 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.201 0.799 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.818 -6.244 -3.326 16.420 hybrid contribution 0.835 0.597 -1.847 2.114 sum -13.983 -5.647 -5.173 15.942 Atomic orbital electron populations 1.21765 0.95035 1.01290 1.02512 1.22128 0.96580 0.95898 1.03334 1.19129 0.83773 0.91932 0.86866 1.21761 1.01269 1.01012 0.95049 1.86568 1.76003 1.57354 1.15617 1.22527 0.97948 1.05135 0.94924 1.23243 0.84279 1.08466 1.04147 1.47931 1.08326 1.34360 1.15508 1.22762 0.80680 1.01012 0.96318 1.19399 0.93389 0.94744 0.94717 1.20896 1.02977 1.34848 0.98559 0.92150 1.24999 0.98571 0.95574 0.94858 1.69966 1.35348 1.36828 1.10203 0.86530 0.82579 0.78755 0.79413 1.20064 1.21082 1.19996 1.78324 1.14903 1.12448 0.99485 1.74964 0.95647 1.19887 1.23723 0.92171 0.92964 0.92269 0.91952 0.90219 0.90452 0.91965 0.91371 0.77824 0.79916 0.89174 0.88749 0.95813 0.94408 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.41 37.16 0.35 -0.97 16 2 C -0.14 -1.53 5.16 -26.73 -0.14 -1.67 16 3 C 0.23 2.82 1.05 -91.77 -0.10 2.73 16 4 C -0.13 -1.65 8.47 37.16 0.31 -1.34 16 5 O -0.55 -6.13 11.81 -35.23 -0.42 -6.55 16 6 C -0.07 -1.04 5.71 -82.78 -0.47 -1.52 16 7 C -0.05 -0.77 10.75 -17.05 -0.18 -0.95 16 8 N -0.27 -5.06 3.44 -61.26 -0.21 -5.27 16 9 C 0.11 2.12 6.39 -4.04 -0.03 2.09 16 10 C 0.02 0.38 5.10 -27.88 -0.14 0.24 16 11 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 12 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 15 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.07 -1.51 12.91 60.35 0.78 -0.73 16 20 N -0.28 -5.31 12.41 33.29 0.41 -4.90 16 21 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 29 H 0.37 2.87 8.69 45.56 0.40 3.27 16 30 H 0.18 2.15 7.83 -52.48 -0.41 1.74 16 31 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -31.41 297.62 -4.46 -35.87 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.42 Total: 0.95 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.80 Total: -14.24 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 1.72 Total: -36.21 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.42 Total: -6.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.41 -4.46 -35.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849141152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.025 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds