Wall clock time and date at job start Sun Mar 29 2020 22:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.46623 * 60.00064 * 3 2 1 5 5 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 6 6 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 7 7 C 1.35351 * 126.74913 * 119.70904 * 6 3 2 8 8 N 1.35307 * 106.17475 * 179.85338 * 7 6 3 9 9 C 1.46505 * 125.86836 * 180.12043 * 8 7 6 10 10 C 1.53000 * 109.46980 * 125.33042 * 9 8 7 11 11 C 1.50703 * 109.47111 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99655 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00080 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46958 * 60.00113 * 15 13 11 17 17 H 1.48497 * 109.47135 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46962 * 299.99948 * 15 13 11 19 19 N 1.28714 * 108.26322 * 0.42109 * 8 7 6 20 20 N 1.28637 * 110.17832 * 359.73630 * 19 8 7 21 21 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 25 25 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 29 29 H 0.96696 * 114.00485 * 299.99339 * 5 3 2 30 30 H 1.08007 * 126.90952 * 0.02562 * 7 6 3 31 31 H 1.09007 * 109.47118 * 245.33027 * 9 8 7 32 32 H 1.08996 * 109.46861 * 5.32864 * 9 8 7 33 33 H 1.08994 * 109.46828 * 299.99845 * 10 9 8 34 34 H 1.09000 * 109.46998 * 60.00224 * 10 9 8 35 35 H 0.97004 * 119.99976 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 1.2493 5 8 1.5636 2.1162 -1.1667 6 6 3.5470 1.4426 0.0006 7 6 4.3572 1.9799 -0.9411 8 7 5.6238 1.7472 -0.5259 9 6 6.8449 2.1518 -1.2269 10 6 7.7273 2.9710 -0.2829 11 6 8.9832 3.3876 -1.0042 12 1 9.1364 3.0975 -2.0332 13 6 9.9365 4.1392 -0.3506 14 7 9.7497 4.4929 0.9022 15 14 11.4936 4.6550 -1.2446 16 1 11.1356 5.4792 -2.4268 17 1 12.3500 5.4502 -0.3284 18 1 12.2326 3.4462 -1.6893 19 7 5.5714 1.1038 0.5877 20 7 4.3470 0.9063 0.9289 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.8934 1.6499 2.1393 27 1 1.8937 3.1912 1.2495 28 1 0.4399 2.1637 1.2493 29 1 1.8489 1.7128 -1.9979 30 1 4.0537 2.4938 -1.8413 31 1 7.3876 1.2644 -1.5530 32 1 6.5822 2.7564 -2.0949 33 1 7.1847 3.8582 0.0431 34 1 7.9901 2.3663 0.5851 35 1 10.4203 5.0219 1.3620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849141152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:11 Heat of formation + Delta-G solvation = 2.292584 kcal Electronic energy + Delta-G solvation = -16918.750403 eV Core-core repulsion = 14145.514126 eV Total energy + Delta-G solvation = -2773.236277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.23841 -39.36807 -36.66728 -34.84493 -34.07357 -32.09205 -31.74149 -29.87383 -27.38650 -25.87339 -24.33062 -23.06163 -22.37910 -20.86778 -19.01376 -18.23638 -17.37479 -17.09865 -16.53422 -16.27312 -16.00578 -15.37611 -15.19005 -14.35927 -14.29066 -13.69338 -13.55963 -13.26676 -12.99431 -12.95259 -12.81300 -12.73442 -12.60382 -12.30908 -12.03941 -11.88984 -11.75654 -11.62098 -11.49062 -11.11703 -10.86629 -10.63457 -10.11029 -8.27444 -6.42399 0.70858 1.41018 1.45086 1.50854 1.52436 1.57971 2.38798 3.07900 3.19125 3.29320 3.78359 3.88110 3.96326 4.04179 4.23437 4.26300 4.53057 4.54226 4.63049 4.73460 4.82022 4.90644 5.03462 5.11615 5.13084 5.21341 5.27857 5.41157 5.43295 5.51055 5.57168 5.76235 6.03084 6.73957 6.81190 7.29234 7.56660 8.85015 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.060458 B = 0.004354 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.018706 B = 6429.737869 C = 6499.928020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.231 3.769 4 C -0.135 4.135 5 O -0.551 6.551 6 C -0.068 4.068 7 C -0.037 4.037 8 N -0.278 5.278 9 C 0.125 3.875 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.975 3.025 16 H -0.260 1.260 17 H -0.289 1.289 18 H -0.264 1.264 19 N -0.127 5.127 20 N -0.294 5.294 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.392 0.608 30 H 0.227 0.773 31 H 0.102 0.898 32 H 0.131 0.869 33 H -0.010 1.010 34 H -0.004 1.004 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.490 -6.131 -7.688 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.188 3.812 4 C -0.192 4.192 5 O -0.358 6.358 6 C -0.208 4.208 7 C -0.190 4.190 8 N -0.071 5.071 9 C 0.006 3.994 10 C -0.015 4.015 11 C -0.583 4.583 12 H 0.100 0.900 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.798 3.202 16 H -0.184 1.184 17 H -0.215 1.215 18 H -0.188 1.188 19 N -0.106 5.106 20 N -0.160 5.160 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.242 0.758 30 H 0.244 0.756 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.008 0.992 34 H 0.014 0.986 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.818 -6.309 -5.986 18.051 hybrid contribution 1.033 0.607 -1.023 1.576 sum -14.785 -5.702 -7.009 17.327 Atomic orbital electron populations 1.21736 0.93259 1.02209 1.02882 1.22072 0.98009 0.94479 1.02902 1.19138 0.81499 0.93061 0.87520 1.21773 1.02688 0.99893 0.94893 1.86552 1.75670 1.57496 1.16049 1.23225 0.99627 1.03997 0.93969 1.23986 0.82743 1.07139 1.05088 1.47887 1.09251 1.34590 1.15336 1.22521 0.80446 1.01083 0.95384 1.19144 0.94153 0.93558 0.94650 1.21433 1.03306 1.34050 0.99531 0.89981 1.26062 1.02489 0.95711 0.95529 1.70137 1.36759 1.38147 1.12302 0.85352 0.77912 0.78659 0.78236 1.18428 1.21488 1.18825 1.78323 1.15995 1.14999 1.01263 1.74900 0.95746 1.20481 1.24853 0.91500 0.91842 0.92137 0.91329 0.91786 0.91414 0.93451 0.89137 0.75831 0.75627 0.87975 0.85136 0.99174 0.98575 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.41 71.98 0.68 -1.50 16 2 C -0.14 -2.70 5.16 30.60 0.16 -2.54 16 3 C 0.23 5.34 1.05 -11.54 -0.01 5.33 16 4 C -0.14 -3.21 8.47 71.98 0.61 -2.60 16 5 O -0.55 -10.47 11.81 -148.98 -1.76 -12.23 16 6 C -0.07 -2.08 5.71 41.60 0.24 -1.84 16 7 C -0.04 -1.09 10.75 83.49 0.90 -0.20 16 8 N -0.28 -10.33 3.44 -347.72 -1.20 -11.53 16 9 C 0.12 4.61 6.39 86.38 0.55 5.17 16 10 C 0.02 1.17 5.10 29.85 0.15 1.32 16 11 C -0.55 -28.80 9.11 25.60 0.23 -28.57 16 12 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -56.54 13.29 21.44 0.28 -56.25 16 15 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 19 N -0.13 -5.50 12.91 37.02 0.48 -5.02 16 20 N -0.29 -11.49 12.41 -48.60 -0.60 -12.09 16 21 H 0.07 0.94 7.68 -2.38 -0.02 0.92 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.90 6.43 -2.39 -0.02 0.89 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.71 6.43 -2.39 -0.02 1.70 16 29 H 0.39 4.44 8.69 -74.06 -0.64 3.80 16 30 H 0.23 4.34 7.83 -2.91 -0.02 4.32 16 31 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 32 H 0.13 3.86 8.07 -2.39 -0.02 3.85 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.00 -0.25 8.12 -2.39 -0.02 -0.27 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -70.55 297.62 3.64 -66.91 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.44 Total: 10.95 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.97 Total: -24.92 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -1.04 Total: -84.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.76 Total: -12.23 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -70.55 3.64 -66.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849141152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.202 kcal (2) G-P(sol) polarization free energy of solvation -70.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds