Wall clock time and date at job start Sun Mar 29 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47464 * 2 1 4 4 C 1.53002 * 109.47102 * 120.00400 * 2 1 3 5 5 N 1.46900 * 109.47278 * 63.64866 * 4 2 1 6 6 C 1.46898 * 111.00030 * 209.94658 * 5 4 2 7 7 C 1.50696 * 109.47486 * 71.74768 * 6 5 4 8 8 H 1.08002 * 119.99690 * 5.06856 * 7 6 5 9 9 C 1.37868 * 120.00195 * 185.06251 * 7 6 5 10 10 N 1.31512 * 120.00214 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00174 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47221 * 89.99877 * 11 9 7 13 13 H 1.48493 * 109.47271 * 209.99757 * 11 9 7 14 14 H 1.48497 * 109.46844 * 329.99774 * 11 9 7 15 15 C 1.46900 * 110.99678 * 85.99100 * 5 4 2 16 16 C 1.50693 * 109.47281 * 290.70802 * 15 5 4 17 17 C 1.40902 * 125.30361 * 97.59104 * 16 15 5 18 18 N 1.29960 * 109.39052 * 180.02562 * 17 16 15 19 19 O 1.41874 * 107.41616 * 0.02562 * 18 17 16 20 20 N 1.29961 * 125.30626 * 277.61557 * 16 15 5 21 21 H 1.08995 * 109.46806 * 64.57924 * 1 2 3 22 22 H 1.08998 * 109.47062 * 184.58414 * 1 2 3 23 23 H 1.08998 * 109.46490 * 304.58687 * 1 2 3 24 24 H 1.08999 * 109.46619 * 239.99530 * 2 1 3 25 25 H 1.09000 * 109.46755 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47023 * 299.99881 * 3 2 1 27 27 H 1.08997 * 109.46887 * 59.99877 * 3 2 1 28 28 H 1.09003 * 109.46956 * 303.65441 * 4 2 1 29 29 H 1.08994 * 109.47198 * 183.65277 * 4 2 1 30 30 H 1.09002 * 109.46782 * 191.75162 * 6 5 4 31 31 H 1.08998 * 109.47135 * 311.74402 * 6 5 4 32 32 H 0.97000 * 120.00393 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47124 * 170.70986 * 15 5 4 34 34 H 1.08996 * 109.47097 * 50.71420 * 15 5 4 35 35 H 1.07994 * 125.30520 * 0.04451 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6237 -2.1294 1.2059 6 6 1.4353 -2.6646 2.5609 7 6 0.1907 -2.0697 3.1675 8 1 -0.4454 -1.4287 2.5752 9 6 -0.1360 -2.3439 4.4786 10 7 -1.2218 -1.8243 5.0082 11 14 0.9646 -3.4522 5.5033 12 1 1.9921 -2.6300 6.1915 13 1 0.1441 -4.1667 6.5139 14 1 1.6324 -4.4408 4.6191 15 6 2.5868 -2.9401 0.4488 16 6 2.5151 -2.5724 -1.0109 17 6 3.3827 -1.6783 -1.6690 18 7 3.0420 -1.5885 -2.9199 19 8 1.9216 -2.4364 -3.1168 20 7 1.6430 -3.0302 -1.8587 21 1 -0.3633 0.4411 -0.9281 22 1 -0.3633 -1.0244 0.0821 23 1 -0.3632 0.5834 0.8461 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4423 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.6242 -0.2468 2.1380 29 1 3.1280 -0.6650 1.2826 30 1 1.3334 -3.7488 2.5123 31 1 2.2978 -2.4080 3.1760 32 1 -1.4515 -2.0168 5.9307 33 1 2.3468 -3.9965 0.5696 34 1 3.5933 -2.7512 0.8220 35 1 4.2032 -1.1502 -1.2061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851778954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:06 Heat of formation + Delta-G solvation = 96.114355 kcal Electronic energy + Delta-G solvation = -17752.043552 eV Core-core repulsion = 14982.875692 eV Total energy + Delta-G solvation = -2769.167859 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41040 -37.83740 -34.37495 -33.49675 -32.64228 -32.10573 -28.49388 -26.86097 -26.61892 -24.58707 -23.04414 -21.10285 -20.49856 -19.67586 -17.22294 -16.74735 -16.00218 -15.22514 -15.09692 -14.61030 -14.36518 -13.94455 -13.73561 -13.33405 -12.94453 -12.50019 -12.26141 -11.90930 -11.80106 -11.64861 -11.53987 -11.33540 -11.18283 -10.87473 -10.79715 -10.56970 -10.49950 -10.16532 -9.95117 -9.80996 -9.39373 -8.65190 -7.67443 -6.11777 -4.10137 0.66558 2.08314 2.82533 3.21135 3.29388 3.29807 3.30812 4.01724 4.34290 4.54450 4.88991 5.09590 5.19149 5.21464 5.34701 5.37555 5.55892 5.60414 5.71127 5.77637 5.98620 6.01127 6.26253 6.31125 6.34836 6.53034 6.63175 6.74415 6.79259 7.04478 7.05101 7.46413 7.66219 7.80191 8.54765 9.00197 9.48802 11.01060 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.007365 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.044555 B = 3800.846983 C = 4233.821183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.059 3.941 5 N -0.517 5.517 6 C 0.166 3.834 7 C -0.510 4.510 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.110 3.890 16 C 0.091 3.909 17 C 0.060 3.940 18 N -0.286 5.286 19 O 0.012 5.988 20 N -0.254 5.254 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.027 0.973 30 H 0.030 0.970 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 1.678 -8.469 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.069 4.069 5 N -0.242 5.242 6 C 0.040 3.960 7 C -0.549 4.549 8 H 0.103 0.897 9 C -0.132 4.132 10 N -0.535 5.535 11 Si 0.700 3.300 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.193 1.193 15 C -0.020 4.020 16 C -0.093 4.093 17 C -0.143 4.143 18 N -0.029 5.029 19 O -0.128 6.128 20 N 0.001 4.999 21 H 0.053 0.947 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.715 1.418 -9.799 13.871 hybrid contribution 1.682 -0.326 1.785 2.474 sum 11.397 1.093 -8.013 13.975 Atomic orbital electron populations 1.21670 0.94140 1.03497 0.99877 1.21311 0.97571 0.94816 0.97627 1.21821 1.00088 0.96620 1.01799 1.22273 0.96348 0.88988 0.99299 1.61861 1.42625 1.01269 1.18436 1.20247 0.96888 0.95858 0.82969 1.20997 1.06846 1.30485 0.96543 0.89654 1.24885 0.95085 0.95649 0.97564 1.69880 1.24766 1.44458 1.14404 0.86907 0.80930 0.81485 0.80637 1.20356 1.21142 1.19251 1.20829 0.96645 1.00461 0.84084 1.24754 0.91219 0.93703 0.99621 1.25978 1.00475 0.96871 0.91007 1.79845 0.99154 1.07993 1.15933 1.93382 1.40831 1.52064 1.26502 1.80051 1.15724 1.13547 0.90594 0.94747 0.90765 0.92622 0.92884 0.93383 0.93107 0.92252 0.88722 0.95486 0.95209 0.99152 0.92579 0.88221 0.92054 0.77726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.13 37.16 0.34 -2.03 16 2 C -0.09 -1.43 2.73 -90.62 -0.25 -1.67 16 3 C -0.15 -1.86 9.19 37.16 0.34 -1.52 16 4 C 0.06 0.97 4.17 -3.82 -0.02 0.95 16 5 N -0.52 -9.43 3.69 -237.52 -0.88 -10.31 16 6 C 0.17 3.59 3.74 -4.98 -0.02 3.57 16 7 C -0.51 -13.47 8.85 -34.45 -0.31 -13.78 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.41 13.96 55.43 0.77 -25.63 16 11 Si 0.87 20.27 27.37 -169.99 -4.65 15.61 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.27 -5.90 6.69 56.52 0.38 -5.52 16 15 C 0.11 1.57 5.47 -4.98 -0.03 1.54 16 16 C 0.09 1.29 4.87 -82.38 -0.40 0.89 16 17 C 0.06 0.71 9.44 -17.34 -0.16 0.54 16 18 N -0.29 -4.06 12.98 30.70 0.40 -3.66 16 19 O 0.01 0.19 13.71 12.02 0.16 0.36 16 20 N -0.25 -4.24 12.98 33.74 0.44 -3.80 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 1.51 7.58 -51.93 -0.39 1.11 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.79 3.49 -51.93 -0.18 0.61 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.83 7.04 -51.93 -0.37 1.46 16 29 H 0.03 0.37 7.63 -51.93 -0.40 -0.02 16 30 H 0.03 0.65 7.18 -51.93 -0.37 0.28 16 31 H -0.01 -0.19 7.20 -51.93 -0.37 -0.57 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.10 1.42 7.79 -51.93 -0.40 1.02 16 34 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 35 H 0.21 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -29.77 289.52 -5.00 -34.77 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.01 Total: -2.02 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -0.60 Total: -9.68 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.73 Total: -43.41 kcal Atomic # 8 Polarization: 0.19 SS G_CDS: 0.16 Total: 0.36 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.65 Total: 15.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.77 -5.00 -34.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851778954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.883 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds