Wall clock time and date at job start Sun Mar 29 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47464 * 2 1 4 4 C 1.53002 * 109.47102 * 120.00400 * 2 1 3 5 5 N 1.46900 * 109.47278 * 63.64866 * 4 2 1 6 6 C 1.46898 * 111.00030 * 209.94658 * 5 4 2 7 7 C 1.50696 * 109.47486 * 71.74768 * 6 5 4 8 8 H 1.08002 * 119.99690 * 5.06856 * 7 6 5 9 9 C 1.37868 * 120.00195 * 185.06251 * 7 6 5 10 10 N 1.31512 * 120.00214 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00174 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47221 * 89.99877 * 11 9 7 13 13 H 1.48493 * 109.47271 * 209.99757 * 11 9 7 14 14 H 1.48497 * 109.46844 * 329.99774 * 11 9 7 15 15 C 1.46900 * 110.99678 * 85.99100 * 5 4 2 16 16 C 1.50693 * 109.47281 * 290.70802 * 15 5 4 17 17 C 1.40902 * 125.30361 * 97.59104 * 16 15 5 18 18 N 1.29960 * 109.39052 * 180.02562 * 17 16 15 19 19 O 1.41874 * 107.41616 * 0.02562 * 18 17 16 20 20 N 1.29961 * 125.30626 * 277.61557 * 16 15 5 21 21 H 1.08995 * 109.46806 * 64.57924 * 1 2 3 22 22 H 1.08998 * 109.47062 * 184.58414 * 1 2 3 23 23 H 1.08998 * 109.46490 * 304.58687 * 1 2 3 24 24 H 1.08999 * 109.46619 * 239.99530 * 2 1 3 25 25 H 1.09000 * 109.46755 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47023 * 299.99881 * 3 2 1 27 27 H 1.08997 * 109.46887 * 59.99877 * 3 2 1 28 28 H 1.09003 * 109.46956 * 303.65441 * 4 2 1 29 29 H 1.08994 * 109.47198 * 183.65277 * 4 2 1 30 30 H 1.09002 * 109.46782 * 191.75162 * 6 5 4 31 31 H 1.08998 * 109.47135 * 311.74402 * 6 5 4 32 32 H 0.97000 * 120.00393 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47124 * 170.70986 * 15 5 4 34 34 H 1.08996 * 109.47097 * 50.71420 * 15 5 4 35 35 H 1.07994 * 125.30520 * 0.04451 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6237 -2.1294 1.2059 6 6 1.4353 -2.6646 2.5609 7 6 0.1907 -2.0697 3.1675 8 1 -0.4454 -1.4287 2.5752 9 6 -0.1360 -2.3439 4.4786 10 7 -1.2218 -1.8243 5.0082 11 14 0.9646 -3.4522 5.5033 12 1 1.9921 -2.6300 6.1915 13 1 0.1441 -4.1667 6.5139 14 1 1.6324 -4.4408 4.6191 15 6 2.5868 -2.9401 0.4488 16 6 2.5151 -2.5724 -1.0109 17 6 3.3827 -1.6783 -1.6690 18 7 3.0420 -1.5885 -2.9199 19 8 1.9216 -2.4364 -3.1168 20 7 1.6430 -3.0302 -1.8587 21 1 -0.3633 0.4411 -0.9281 22 1 -0.3633 -1.0244 0.0821 23 1 -0.3632 0.5834 0.8461 24 1 1.8933 -0.5139 -0.8900 25 1 3.1301 1.4423 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 1.6242 -0.2468 2.1380 29 1 3.1280 -0.6650 1.2826 30 1 1.3334 -3.7488 2.5123 31 1 2.2978 -2.4080 3.1760 32 1 -1.4515 -2.0168 5.9307 33 1 2.3468 -3.9965 0.5696 34 1 3.5933 -2.7512 0.8220 35 1 4.2032 -1.1502 -1.2061 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851778954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:05 Heat of formation + Delta-G solvation = 74.907401 kcal Electronic energy + Delta-G solvation = -17752.963154 eV Core-core repulsion = 14982.875692 eV Total energy + Delta-G solvation = -2770.087462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50046 -39.17700 -35.69548 -34.95101 -34.10170 -33.48497 -30.16740 -28.09182 -27.95857 -26.05471 -24.23103 -22.60649 -21.72730 -20.95525 -18.92817 -18.07070 -17.24397 -16.63136 -16.33693 -15.99949 -15.72787 -15.28909 -15.07503 -14.65422 -14.39749 -14.01569 -13.67849 -13.34347 -13.02176 -12.97881 -12.74231 -12.64995 -12.48934 -12.37033 -12.28775 -11.91212 -11.81339 -11.69815 -11.49219 -11.45606 -11.04265 -10.72235 -9.03962 -8.21216 -6.24275 -0.40566 1.06361 1.39604 1.42722 1.52144 1.68535 2.23758 2.39908 2.96333 3.13134 3.27293 3.88306 3.95095 4.07305 4.16384 4.30287 4.43469 4.55274 4.58550 4.68602 4.78034 4.79776 4.86708 5.00710 5.05882 5.10023 5.16894 5.29461 5.47660 5.53956 5.61140 5.96046 6.00497 6.36790 6.64548 6.85744 7.39055 8.95577 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.007365 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.044555 B = 3800.846983 C = 4233.821183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.061 3.939 5 N -0.543 5.543 6 C 0.176 3.824 7 C -0.510 4.510 8 H 0.038 0.962 9 C 0.005 3.995 10 N -0.953 5.953 11 Si 0.946 3.054 12 H -0.265 1.265 13 H -0.292 1.292 14 H -0.242 1.242 15 C 0.108 3.892 16 C 0.098 3.902 17 C 0.082 3.918 18 N -0.297 5.297 19 O -0.023 6.023 20 N -0.291 5.291 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 1.463 -8.571 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.066 4.066 5 N -0.268 5.268 6 C 0.050 3.950 7 C -0.548 4.548 8 H 0.056 0.944 9 C -0.192 4.192 10 N -0.594 5.594 11 Si 0.770 3.230 12 H -0.190 1.190 13 H -0.219 1.219 14 H -0.165 1.165 15 C -0.021 4.021 16 C -0.086 4.086 17 C -0.121 4.121 18 N -0.044 5.044 19 O -0.156 6.156 20 N -0.037 5.037 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 13.529 1.189 -9.963 16.844 hybrid contribution 0.444 -0.190 1.772 1.837 sum 13.973 0.999 -8.191 16.228 Atomic orbital electron populations 1.21593 0.96841 1.00833 0.99450 1.21277 0.95186 0.96744 0.97446 1.21789 1.02080 0.94326 1.01689 1.22254 0.98595 0.87694 0.98097 1.61597 1.45624 1.02605 1.16943 1.19956 0.94787 0.95430 0.84844 1.21284 1.08034 1.29202 0.96291 0.94418 1.25856 0.96645 0.97515 0.99179 1.70069 1.27460 1.46988 1.14881 0.85740 0.78874 0.79707 0.78727 1.19038 1.21852 1.16485 1.20966 0.97970 0.99749 0.83387 1.24956 0.90911 0.93408 0.99320 1.26687 1.00304 0.95232 0.89853 1.79850 0.98853 1.08385 1.17326 1.93374 1.42360 1.53159 1.26732 1.80030 1.17252 1.15007 0.91399 0.93793 0.94287 0.94568 0.92043 0.90141 0.92538 0.93163 0.92389 0.91167 0.94989 0.97480 0.92741 0.88343 0.87356 0.72607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.13 71.98 0.66 -4.05 16 2 C -0.09 -2.49 2.73 -10.79 -0.03 -2.52 16 3 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 4 C 0.06 1.87 4.17 86.30 0.36 2.23 16 5 N -0.54 -18.81 3.69 -905.39 -3.34 -22.15 16 6 C 0.18 7.33 3.74 85.56 0.32 7.65 16 7 C -0.51 -27.57 8.85 25.60 0.23 -27.34 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 9 C 0.00 0.26 5.47 84.65 0.46 0.72 16 10 N -0.95 -58.36 13.96 21.44 0.30 -58.06 16 11 Si 0.95 41.26 27.37 68.60 1.88 43.14 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.24 -9.44 6.69 99.48 0.67 -8.77 16 15 C 0.11 2.69 5.47 85.55 0.47 3.16 16 16 C 0.10 2.50 4.87 43.49 0.21 2.71 16 17 C 0.08 1.59 9.44 85.62 0.81 2.40 16 18 N -0.30 -7.67 12.98 -56.79 -0.74 -8.41 16 19 O -0.02 -0.76 13.71 70.16 0.96 0.21 16 20 N -0.29 -9.45 12.98 -47.15 -0.61 -10.07 16 21 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.04 1.66 7.58 -2.39 -0.02 1.64 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.66 3.49 -2.39 -0.01 1.66 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 2.21 7.04 -2.39 -0.02 2.20 16 29 H 0.07 1.54 7.63 -2.39 -0.02 1.52 16 30 H 0.03 1.32 7.18 -2.39 -0.02 1.31 16 31 H 0.01 0.29 7.20 -2.39 -0.02 0.27 16 32 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.10 2.51 7.79 -2.39 -0.02 2.49 16 34 H 0.11 1.76 7.81 -2.39 -0.02 1.74 16 35 H 0.26 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.83 289.52 3.63 -66.20 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.03 Total: 6.70 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.15 Total: -17.56 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.39 Total: -98.68 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: 0.96 Total: 0.21 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -69.83 3.63 -66.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851778954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.106 kcal (2) G-P(sol) polarization free energy of solvation -69.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds