Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99998 * 2 1 4 4 C 1.53000 * 109.46904 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47290 * 65.00320 * 4 3 2 6 6 C 1.36941 * 119.99758 * 270.00266 * 5 4 3 7 7 H 1.07990 * 119.99829 * 145.90048 * 6 5 4 8 8 C 1.38811 * 119.99666 * 325.89286 * 6 5 4 9 9 N 1.31621 * 120.00206 * 336.78054 * 8 6 5 10 10 Si 1.86797 * 119.99766 * 156.78795 * 8 6 5 11 11 H 1.48499 * 109.47471 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47426 * 119.99990 * 10 8 6 13 13 H 1.48506 * 109.47189 * 239.99752 * 10 8 6 14 14 C 1.46493 * 119.99921 * 89.99341 * 5 4 3 15 15 C 1.50699 * 109.47044 * 89.84089 * 14 5 4 16 16 N 1.30506 * 125.64822 * 274.68832 * 15 14 5 17 17 C 1.34130 * 109.25358 * 179.89296 * 16 15 14 18 18 C 1.34671 * 108.01947 * 0.36996 * 17 16 15 19 19 C 1.50702 * 126.58929 * 179.74238 * 18 17 16 20 20 N 1.35042 * 125.64913 * 94.99687 * 15 14 5 21 21 H 0.96992 * 126.40390 * 359.97438 * 20 15 14 22 22 H 1.08995 * 109.47337 * 59.99921 * 1 2 3 23 23 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46724 * 299.99721 * 1 2 3 25 25 H 1.08994 * 109.47091 * 60.00673 * 3 2 1 26 26 H 1.08993 * 109.47192 * 300.00053 * 3 2 1 27 27 H 1.09000 * 109.47813 * 305.00325 * 4 3 2 28 28 H 1.09001 * 109.46914 * 184.99792 * 4 3 2 29 29 H 0.97007 * 119.99909 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47505 * 209.84027 * 14 5 4 31 31 H 1.08996 * 109.47701 * 329.83874 * 14 5 4 32 32 H 1.07999 * 125.98806 * 180.18777 * 17 16 15 33 33 H 1.08999 * 109.47188 * 270.05031 * 19 18 17 34 34 H 1.09009 * 109.47091 * 30.04355 * 19 18 17 35 35 H 1.08997 * 109.47198 * 150.04630 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7971 -1.3370 7 1 3.8749 -1.3024 -2.2652 8 6 4.5045 -1.5274 -0.2293 9 7 5.1972 -0.9433 0.7255 10 14 4.0705 -3.3391 -0.0936 11 1 3.2921 -3.7526 -1.2888 12 1 5.3170 -4.1421 -0.0121 13 1 3.2567 -3.5631 1.1283 14 6 4.2863 1.4007 -2.4148 15 6 5.7432 1.7844 -2.3825 16 7 6.2486 2.7982 -1.7344 17 6 7.5750 2.8317 -1.9304 18 6 7.9030 1.8044 -2.7370 19 6 9.2836 1.4543 -3.2296 20 7 6.7414 1.1396 -3.0241 21 1 6.6520 0.3527 -3.5839 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8516 0.5681 0.8409 28 1 3.9785 2.1765 0.0889 29 1 5.4819 -1.4536 1.4998 30 1 4.0772 0.8448 -3.3289 31 1 3.6727 2.3012 -2.3889 32 1 8.2596 3.5574 -1.5166 33 1 9.4757 1.9709 -4.1699 34 1 10.0223 1.7612 -2.4890 35 1 9.3515 0.3778 -3.3860 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862388671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = 31.292063 kcal Electronic energy + Delta-G solvation = -17578.602082 eV Core-core repulsion = 14806.623317 eV Total energy + Delta-G solvation = -2771.978765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.16618 -37.15052 -35.28139 -32.13110 -31.59367 -30.82934 -29.06515 -26.95904 -25.61340 -24.48426 -22.96227 -20.69376 -20.18902 -19.50545 -16.70519 -16.50219 -15.64575 -15.08007 -14.72768 -14.40408 -13.96710 -13.57896 -13.47025 -13.35176 -12.87202 -12.45900 -12.24638 -12.10197 -11.74301 -11.53182 -11.01126 -10.83508 -10.70115 -10.60967 -10.14041 -9.96819 -9.67722 -9.16793 -9.10771 -8.77580 -8.44270 -7.44066 -6.64262 -5.72993 -3.27904 2.82049 3.41195 3.50257 3.52183 3.91890 3.98990 4.56235 4.75223 5.33187 5.41739 5.51076 5.52662 5.64498 5.78662 5.80668 5.84835 6.04748 6.09010 6.11348 6.14040 6.20648 6.34342 6.44838 6.61165 6.73381 6.91021 7.04784 7.56195 7.75890 7.84158 8.11739 8.22779 8.54208 8.99105 9.18835 9.83764 10.37495 11.26937 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.008700 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.080990 B = 3217.464254 C = 4037.274853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.049 3.951 4 C 0.139 3.861 5 N -0.559 5.559 6 C -0.251 4.251 7 H 0.060 0.940 8 C 0.022 3.978 9 N -0.880 5.880 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.287 1.287 14 C 0.215 3.785 15 C 0.230 3.770 16 N -0.503 5.503 17 C -0.029 4.029 18 C -0.057 4.057 19 C -0.068 4.068 20 N -0.557 5.557 21 H 0.411 0.589 22 H 0.029 0.971 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.253 0.747 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.154 0.846 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 4.032 -5.885 7.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C -0.030 4.030 4 C 0.013 3.987 5 N -0.277 5.277 6 C -0.380 4.380 7 H 0.077 0.923 8 C -0.179 4.179 9 N -0.522 5.522 10 Si 0.729 3.271 11 H -0.202 1.202 12 H -0.223 1.223 13 H -0.214 1.214 14 C 0.086 3.914 15 C -0.038 4.038 16 N -0.223 5.223 17 C -0.178 4.178 18 C -0.173 4.173 19 C -0.126 4.126 20 N -0.159 5.159 21 H 0.248 0.752 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.536 4.389 -5.220 6.841 hybrid contribution 0.152 -1.684 -0.386 1.734 sum -0.384 2.705 -5.606 6.236 Atomic orbital electron populations 1.22627 0.84382 1.01368 0.98411 1.88220 1.16448 1.27860 1.94830 1.23374 0.98627 0.83987 0.96982 1.21128 0.87398 0.97611 0.92564 1.43899 1.72940 1.02351 1.08502 1.18918 1.39538 0.81174 0.98416 0.92275 1.25019 0.96505 0.97708 0.98659 1.70016 1.35402 1.35939 1.10849 0.86319 0.77486 0.85354 0.77969 1.20216 1.22341 1.21356 1.19647 0.83779 0.94988 0.93027 1.25299 0.94910 0.89963 0.93628 1.70173 1.08234 1.21021 1.22882 1.21875 0.93165 1.00145 1.02611 1.21028 0.88967 0.99299 1.07979 1.20066 0.90690 1.01133 1.00693 1.43161 1.07100 1.25577 1.40050 0.75194 0.95281 0.90849 0.95572 0.95543 0.95356 0.87652 0.93104 0.93724 0.92291 0.91449 0.82819 0.91998 0.90787 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.91 10.18 -35.23 -0.36 -8.26 16 3 C 0.05 1.02 6.28 37.16 0.23 1.25 16 4 C 0.14 3.35 5.72 -4.04 -0.02 3.33 16 5 N -0.56 -13.64 2.41 -174.61 -0.42 -14.06 16 6 C -0.25 -6.68 8.98 -15.06 -0.14 -6.81 16 7 H 0.06 1.56 7.93 -52.49 -0.42 1.15 16 8 C 0.02 0.61 4.94 -17.43 -0.09 0.52 16 9 N -0.88 -25.71 11.34 55.49 0.63 -25.08 16 10 Si 0.90 22.14 29.61 -169.99 -5.03 17.11 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.22 4.50 6.29 -5.20 -0.03 4.47 16 15 C 0.23 4.93 7.74 -155.41 -1.20 3.73 16 16 N -0.50 -11.32 11.25 -10.81 -0.12 -11.44 16 17 C -0.03 -0.58 11.79 -17.81 -0.21 -0.79 16 18 C -0.06 -1.02 7.24 -81.60 -0.59 -1.61 16 19 C -0.07 -0.88 10.44 36.01 0.38 -0.51 16 20 N -0.56 -10.60 6.15 -6.54 -0.04 -10.64 16 21 H 0.41 6.87 8.96 -40.82 -0.37 6.50 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.11 2.93 5.33 -51.93 -0.28 2.65 16 28 H 0.05 1.21 8.07 -51.93 -0.42 0.79 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 31 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.15 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -32.40 300.62 -6.63 -39.03 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -5.25 Total: 3.62 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.56 Total: 5.20 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.05 Total: -61.22 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.36 Total: -8.26 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.40 -6.63 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862388671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.318 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds