Wall clock time and date at job start Sun Mar 29 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99998 * 2 1 4 4 C 1.53000 * 109.46904 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47290 * 65.00320 * 4 3 2 6 6 C 1.36941 * 119.99758 * 270.00266 * 5 4 3 7 7 H 1.07990 * 119.99829 * 145.90048 * 6 5 4 8 8 C 1.38811 * 119.99666 * 325.89286 * 6 5 4 9 9 N 1.31621 * 120.00206 * 336.78054 * 8 6 5 10 10 Si 1.86797 * 119.99766 * 156.78795 * 8 6 5 11 11 H 1.48499 * 109.47471 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47426 * 119.99990 * 10 8 6 13 13 H 1.48506 * 109.47189 * 239.99752 * 10 8 6 14 14 C 1.46493 * 119.99921 * 89.99341 * 5 4 3 15 15 C 1.50699 * 109.47044 * 89.84089 * 14 5 4 16 16 N 1.30506 * 125.64822 * 274.68832 * 15 14 5 17 17 C 1.34130 * 109.25358 * 179.89296 * 16 15 14 18 18 C 1.34671 * 108.01947 * 0.36996 * 17 16 15 19 19 C 1.50702 * 126.58929 * 179.74238 * 18 17 16 20 20 N 1.35042 * 125.64913 * 94.99687 * 15 14 5 21 21 H 0.96992 * 126.40390 * 359.97438 * 20 15 14 22 22 H 1.08995 * 109.47337 * 59.99921 * 1 2 3 23 23 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46724 * 299.99721 * 1 2 3 25 25 H 1.08994 * 109.47091 * 60.00673 * 3 2 1 26 26 H 1.08993 * 109.47192 * 300.00053 * 3 2 1 27 27 H 1.09000 * 109.47813 * 305.00325 * 4 3 2 28 28 H 1.09001 * 109.46914 * 184.99792 * 4 3 2 29 29 H 0.97007 * 119.99909 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47505 * 209.84027 * 14 5 4 31 31 H 1.08996 * 109.47701 * 329.83874 * 14 5 4 32 32 H 1.07999 * 125.98806 * 180.18777 * 17 16 15 33 33 H 1.08999 * 109.47188 * 270.05031 * 19 18 17 34 34 H 1.09009 * 109.47091 * 30.04355 * 19 18 17 35 35 H 1.08997 * 109.47198 * 150.04630 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7971 -1.3370 7 1 3.8749 -1.3024 -2.2652 8 6 4.5045 -1.5274 -0.2293 9 7 5.1972 -0.9433 0.7255 10 14 4.0705 -3.3391 -0.0936 11 1 3.2921 -3.7526 -1.2888 12 1 5.3170 -4.1421 -0.0121 13 1 3.2567 -3.5631 1.1283 14 6 4.2863 1.4007 -2.4148 15 6 5.7432 1.7844 -2.3825 16 7 6.2486 2.7982 -1.7344 17 6 7.5750 2.8317 -1.9304 18 6 7.9030 1.8044 -2.7370 19 6 9.2836 1.4543 -3.2296 20 7 6.7414 1.1396 -3.0241 21 1 6.6520 0.3527 -3.5839 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8516 0.5681 0.8409 28 1 3.9785 2.1765 0.0889 29 1 5.4819 -1.4536 1.4998 30 1 4.0772 0.8448 -3.3289 31 1 3.6727 2.3012 -2.3889 32 1 8.2596 3.5574 -1.5166 33 1 9.4757 1.9709 -4.1699 34 1 10.0223 1.7612 -2.4890 35 1 9.3515 0.3778 -3.3860 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862388671.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:35 Heat of formation + Delta-G solvation = 9.583365 kcal Electronic energy + Delta-G solvation = -17579.543441 eV Core-core repulsion = 14806.623317 eV Total energy + Delta-G solvation = -2772.920125 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.68972 -38.80091 -37.06249 -33.76128 -33.32343 -32.40361 -30.66348 -28.62958 -27.08512 -26.07972 -24.70382 -22.45001 -21.72418 -21.11555 -18.63286 -18.05127 -17.25752 -16.72675 -16.52406 -15.98161 -15.58258 -15.36707 -14.94336 -14.89893 -14.38235 -13.96294 -13.45757 -13.42299 -13.29500 -13.13336 -12.77306 -12.59293 -12.53654 -12.28622 -11.97404 -11.89017 -11.51154 -10.74414 -10.68591 -10.48564 -10.30809 -8.95363 -8.60120 -7.76892 -5.34124 1.32723 1.44563 1.51234 1.58049 2.35812 2.50671 2.59053 3.23722 3.37505 3.77583 3.92533 4.25531 4.37891 4.44840 4.54383 4.57560 4.65057 4.66934 4.75945 4.82037 4.83375 4.87852 5.02343 5.04005 5.10411 5.12520 5.58001 5.69950 5.84519 6.09065 6.43199 6.68023 6.76082 7.18010 7.44553 7.87591 8.39056 9.20362 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.008700 C = 0.006934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.080990 B = 3217.464254 C = 4037.274853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.059 3.941 4 C 0.141 3.859 5 N -0.570 5.570 6 C -0.240 4.240 7 H 0.061 0.939 8 C -0.026 4.026 9 N -0.915 5.915 10 Si 0.950 3.050 11 H -0.266 1.266 12 H -0.298 1.298 13 H -0.298 1.298 14 C 0.217 3.783 15 C 0.204 3.796 16 N -0.533 5.533 17 C -0.065 4.065 18 C -0.041 4.041 19 C -0.065 4.065 20 N -0.555 5.555 21 H 0.421 0.579 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.245 0.755 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 3.988 -7.321 8.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.019 4.019 4 C 0.015 3.985 5 N -0.290 5.290 6 C -0.371 4.371 7 H 0.079 0.921 8 C -0.223 4.223 9 N -0.560 5.560 10 Si 0.780 3.220 11 H -0.191 1.191 12 H -0.226 1.226 13 H -0.225 1.225 14 C 0.089 3.911 15 C -0.064 4.064 16 N -0.254 5.254 17 C -0.212 4.212 18 C -0.158 4.158 19 C -0.123 4.123 20 N -0.158 5.158 21 H 0.260 0.740 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.192 0.808 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.605 4.348 -6.692 8.003 hybrid contribution 0.185 -1.582 -0.013 1.593 sum -0.420 2.766 -6.705 7.265 Atomic orbital electron populations 1.22829 0.81572 1.02636 1.00098 1.88134 1.19604 1.28572 1.95198 1.23134 0.96131 0.84047 0.98589 1.20939 0.89913 0.96161 0.91478 1.43988 1.73637 1.02136 1.09196 1.19105 1.37451 0.82436 0.98073 0.92148 1.25573 0.97255 1.00617 0.98888 1.70162 1.37516 1.36905 1.11422 0.85496 0.76890 0.81998 0.77619 1.19050 1.22590 1.22491 1.19691 0.84014 0.95213 0.92229 1.25125 0.95400 0.90837 0.95020 1.70090 1.09941 1.21939 1.23431 1.22378 0.92722 1.01964 1.04167 1.21790 0.90377 0.97747 1.05886 1.20236 0.87749 1.02061 1.02239 1.43194 1.07130 1.25740 1.39764 0.74022 0.93584 0.89903 0.93762 0.93680 0.93748 0.91401 0.93869 0.94578 0.90509 0.90308 0.80817 0.89299 0.89302 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -17.18 10.18 -148.98 -1.52 -18.69 16 3 C 0.06 2.41 6.28 71.98 0.45 2.86 16 4 C 0.14 6.88 5.72 86.38 0.49 7.38 16 5 N -0.57 -27.74 2.41 -706.35 -1.70 -29.44 16 6 C -0.24 -12.72 8.98 84.03 0.75 -11.96 16 7 H 0.06 3.13 7.93 -2.92 -0.02 3.11 16 8 C -0.03 -1.46 4.94 84.86 0.42 -1.04 16 9 N -0.92 -54.72 11.34 21.65 0.25 -54.48 16 10 Si 0.95 45.79 29.61 68.60 2.03 47.83 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 14 C 0.22 8.92 6.29 85.63 0.54 9.45 16 15 C 0.20 8.64 7.74 138.13 1.07 9.71 16 16 N -0.53 -23.93 11.25 -188.13 -2.12 -26.04 16 17 C -0.06 -2.51 11.79 83.52 0.98 -1.52 16 18 C -0.04 -1.41 7.24 40.95 0.30 -1.11 16 19 C -0.07 -1.48 10.44 71.24 0.74 -0.74 16 20 N -0.55 -20.41 6.15 -174.60 -1.07 -21.48 16 21 H 0.42 13.39 8.96 -92.71 -0.83 12.56 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 3.89 5.33 -2.39 -0.01 3.88 16 28 H 0.04 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.24 14.37 8.31 -92.70 -0.77 13.60 16 30 H 0.08 2.82 8.04 -2.38 -0.02 2.80 16 31 H 0.08 2.99 8.07 -2.39 -0.02 2.98 16 32 H 0.17 5.68 8.06 -2.91 -0.02 5.65 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -69.96 300.62 3.11 -66.84 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.25 Total: 20.41 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 7.00 Total: 15.06 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -4.65 Total: -131.45 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.52 Total: -18.69 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.96 3.11 -66.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862388671.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.428 kcal (2) G-P(sol) polarization free energy of solvation -69.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds